Hb_000177_120

Information

Type -
Description -
Location Contig177: 245301-248046
Sequence    

Annotation

kegg
ID pop:POPTR_0188s00200g
description hypothetical protein
nr
ID XP_012082146.1
description PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
swissprot
ID P0C5E2
description Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=2 SV=2
trembl
ID U7E218
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0188s00200g PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g18390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000177_120 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
2 Hb_000286_190 0.1388639815 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
3 Hb_006326_030 0.1398647192 - - conserved hypothetical protein [Ricinus communis]
4 Hb_029508_030 0.143156714 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
5 Hb_007894_260 0.1437155586 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_006569_110 0.1500318458 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000254_150 0.1550125614 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
8 Hb_018212_020 0.1559940737 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
9 Hb_000512_040 0.162127305 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_006938_010 0.1661060804 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
11 Hb_001675_230 0.1688147218 - - scab resistance family protein [Populus trichocarpa]
12 Hb_008692_010 0.1690545066 - - putative polyol transported protein 2 [Hevea brasiliensis]
13 Hb_000920_360 0.1705901422 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
14 Hb_000046_060 0.1725785865 - - sugar transporter, putative [Ricinus communis]
15 Hb_175296_010 0.1727672661 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_108884_020 0.1736482773 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
17 Hb_110218_010 0.1753423059 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
18 Hb_001864_010 0.1777406474 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005618_110 0.1810113904 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
20 Hb_002740_170 0.1814892222 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]

Gene co-expression network

sample Hb_000177_120 Hb_000177_120 Hb_000286_190 Hb_000286_190 Hb_000177_120--Hb_000286_190 Hb_006326_030 Hb_006326_030 Hb_000177_120--Hb_006326_030 Hb_029508_030 Hb_029508_030 Hb_000177_120--Hb_029508_030 Hb_007894_260 Hb_007894_260 Hb_000177_120--Hb_007894_260 Hb_006569_110 Hb_006569_110 Hb_000177_120--Hb_006569_110 Hb_000254_150 Hb_000254_150 Hb_000177_120--Hb_000254_150 Hb_000920_360 Hb_000920_360 Hb_000286_190--Hb_000920_360 Hb_000286_190--Hb_029508_030 Hb_005797_030 Hb_005797_030 Hb_000286_190--Hb_005797_030 Hb_001864_010 Hb_001864_010 Hb_000286_190--Hb_001864_010 Hb_004574_010 Hb_004574_010 Hb_000286_190--Hb_004574_010 Hb_000608_450 Hb_000608_450 Hb_000286_190--Hb_000608_450 Hb_018212_020 Hb_018212_020 Hb_006326_030--Hb_018212_020 Hb_010813_030 Hb_010813_030 Hb_006326_030--Hb_010813_030 Hb_132515_010 Hb_132515_010 Hb_006326_030--Hb_132515_010 Hb_006326_030--Hb_000286_190 Hb_006326_030--Hb_000920_360 Hb_000876_050 Hb_000876_050 Hb_006326_030--Hb_000876_050 Hb_000221_170 Hb_000221_170 Hb_029508_030--Hb_000221_170 Hb_029508_030--Hb_000920_360 Hb_029508_030--Hb_001864_010 Hb_001709_070 Hb_001709_070 Hb_029508_030--Hb_001709_070 Hb_029508_030--Hb_000876_050 Hb_007894_260--Hb_006569_110 Hb_006938_010 Hb_006938_010 Hb_007894_260--Hb_006938_010 Hb_003060_080 Hb_003060_080 Hb_007894_260--Hb_003060_080 Hb_000010_200 Hb_000010_200 Hb_007894_260--Hb_000010_200 Hb_000381_030 Hb_000381_030 Hb_007894_260--Hb_000381_030 Hb_007894_260--Hb_000920_360 Hb_006569_110--Hb_006938_010 Hb_006569_110--Hb_003060_080 Hb_006569_110--Hb_000254_150 Hb_002928_220 Hb_002928_220 Hb_006569_110--Hb_002928_220 Hb_006970_100 Hb_006970_100 Hb_006569_110--Hb_006970_100 Hb_000254_150--Hb_018212_020 Hb_000254_150--Hb_010813_030 Hb_005618_110 Hb_005618_110 Hb_000254_150--Hb_005618_110 Hb_001675_130 Hb_001675_130 Hb_000254_150--Hb_001675_130 Hb_000254_150--Hb_006938_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00887814 2.49863 0.250983 0.129365 0.00831049 0.033778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0475981 0.150826 5.90913 1.37866

CAGE analysis