Hb_002090_010

Information

Type -
Description -
Location Contig2090: 129-3309
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID EXX50149.1
description gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A015J5I9
description Gag-pol fusion protein OS=Rhizophagus irregularis DAOM 197198w GN=RirG_273610 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002090_010 0.0 - - gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
2 Hb_094002_010 0.123714701 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
3 Hb_008055_030 0.2100834373 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_005595_030 0.2124487606 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
5 Hb_001880_020 0.215790846 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
6 Hb_108557_010 0.2160609292 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
7 Hb_000418_160 0.219347221 - - -
8 Hb_003927_020 0.2292363004 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
9 Hb_000167_070 0.2329396728 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
10 Hb_001355_050 0.2340434385 - - -
11 Hb_087161_010 0.2345896605 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_007885_110 0.2355378686 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
13 Hb_001871_030 0.2362331487 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002888_080 0.2362363119 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
15 Hb_000574_030 0.2412331706 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_011892_010 0.2420575743 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_133191_010 0.2426123297 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
18 Hb_006992_030 0.2449310676 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
19 Hb_001856_280 0.2474605288 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
20 Hb_000832_010 0.2505755672 - - hypothetical protein VITISV_005044 [Vitis vinifera]

Gene co-expression network

sample Hb_002090_010 Hb_002090_010 Hb_094002_010 Hb_094002_010 Hb_002090_010--Hb_094002_010 Hb_008055_030 Hb_008055_030 Hb_002090_010--Hb_008055_030 Hb_005595_030 Hb_005595_030 Hb_002090_010--Hb_005595_030 Hb_001880_020 Hb_001880_020 Hb_002090_010--Hb_001880_020 Hb_108557_010 Hb_108557_010 Hb_002090_010--Hb_108557_010 Hb_000418_160 Hb_000418_160 Hb_002090_010--Hb_000418_160 Hb_094002_010--Hb_005595_030 Hb_001355_050 Hb_001355_050 Hb_094002_010--Hb_001355_050 Hb_094002_010--Hb_001880_020 Hb_003927_020 Hb_003927_020 Hb_094002_010--Hb_003927_020 Hb_150516_010 Hb_150516_010 Hb_094002_010--Hb_150516_010 Hb_005920_030 Hb_005920_030 Hb_008055_030--Hb_005920_030 Hb_001856_280 Hb_001856_280 Hb_008055_030--Hb_001856_280 Hb_007885_110 Hb_007885_110 Hb_008055_030--Hb_007885_110 Hb_043792_030 Hb_043792_030 Hb_008055_030--Hb_043792_030 Hb_019654_170 Hb_019654_170 Hb_008055_030--Hb_019654_170 Hb_004520_010 Hb_004520_010 Hb_008055_030--Hb_004520_010 Hb_005595_030--Hb_001355_050 Hb_005595_030--Hb_001880_020 Hb_005595_030--Hb_003927_020 Hb_006992_030 Hb_006992_030 Hb_005595_030--Hb_006992_030 Hb_000167_070 Hb_000167_070 Hb_005595_030--Hb_000167_070 Hb_001880_020--Hb_000167_070 Hb_001880_020--Hb_003927_020 Hb_001880_020--Hb_001856_280 Hb_001880_020--Hb_043792_030 Hb_001880_020--Hb_001355_050 Hb_004228_040 Hb_004228_040 Hb_108557_010--Hb_004228_040 Hb_002888_080 Hb_002888_080 Hb_108557_010--Hb_002888_080 Hb_157029_010 Hb_157029_010 Hb_108557_010--Hb_157029_010 Hb_031474_020 Hb_031474_020 Hb_108557_010--Hb_031474_020 Hb_064106_010 Hb_064106_010 Hb_108557_010--Hb_064106_010 Hb_002072_050 Hb_002072_050 Hb_000418_160--Hb_002072_050 Hb_005405_010 Hb_005405_010 Hb_000418_160--Hb_005405_010 Hb_004762_020 Hb_004762_020 Hb_000418_160--Hb_004762_020 Hb_011987_010 Hb_011987_010 Hb_000418_160--Hb_011987_010 Hb_022599_010 Hb_022599_010 Hb_000418_160--Hb_022599_010 Hb_062317_010 Hb_062317_010 Hb_000418_160--Hb_062317_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00703912 0.0105368 0 0 0.0124338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0352849 0.0811394

CAGE analysis