Hb_002072_050

Information

Type -
Description -
Location Contig2072: 100323-106559
Sequence    

Annotation

kegg
ID bvg:104894399
description uncharacterized LOC104894399
nr
ID XP_010678922.1
description PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
swissprot
ID P31795
description Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1
trembl
ID A5BTX5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021275 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon gag protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002072_050 0.0 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
2 Hb_000418_160 0.1440110581 - - -
3 Hb_023547_010 0.2021090055 - - protein binding protein, putative [Ricinus communis]
4 Hb_005352_010 0.2086964967 - - -
5 Hb_022599_010 0.209006786 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
6 Hb_004762_020 0.2141136264 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_123951_010 0.2176503205 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
8 Hb_005405_010 0.2179048523 - - -
9 Hb_004968_090 0.2182564083 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
10 Hb_005666_030 0.2183497748 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
11 Hb_027522_020 0.2193675317 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_005551_030 0.2195586525 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
13 Hb_000648_150 0.2212472693 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
14 Hb_001691_130 0.2214511226 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
15 Hb_001231_020 0.2217669592 - - -
16 Hb_000100_120 0.2227967358 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
17 Hb_002630_030 0.2251242692 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
18 Hb_106274_010 0.2254217509 - - hypothetical protein VITISV_008825 [Vitis vinifera]
19 Hb_015824_020 0.2264251473 - - -
20 Hb_023386_030 0.2274976886 - - -

Gene co-expression network

sample Hb_002072_050 Hb_002072_050 Hb_000418_160 Hb_000418_160 Hb_002072_050--Hb_000418_160 Hb_023547_010 Hb_023547_010 Hb_002072_050--Hb_023547_010 Hb_005352_010 Hb_005352_010 Hb_002072_050--Hb_005352_010 Hb_022599_010 Hb_022599_010 Hb_002072_050--Hb_022599_010 Hb_004762_020 Hb_004762_020 Hb_002072_050--Hb_004762_020 Hb_123951_010 Hb_123951_010 Hb_002072_050--Hb_123951_010 Hb_005405_010 Hb_005405_010 Hb_000418_160--Hb_005405_010 Hb_000418_160--Hb_004762_020 Hb_011987_010 Hb_011987_010 Hb_000418_160--Hb_011987_010 Hb_000418_160--Hb_022599_010 Hb_062317_010 Hb_062317_010 Hb_000418_160--Hb_062317_010 Hb_001338_090 Hb_001338_090 Hb_023547_010--Hb_001338_090 Hb_149598_010 Hb_149598_010 Hb_023547_010--Hb_149598_010 Hb_004375_020 Hb_004375_020 Hb_023547_010--Hb_004375_020 Hb_000123_070 Hb_000123_070 Hb_023547_010--Hb_000123_070 Hb_179142_010 Hb_179142_010 Hb_023547_010--Hb_179142_010 Hb_000648_150 Hb_000648_150 Hb_023547_010--Hb_000648_150 Hb_027522_020 Hb_027522_020 Hb_005352_010--Hb_027522_020 Hb_005352_010--Hb_022599_010 Hb_005352_010--Hb_062317_010 Hb_005352_010--Hb_123951_010 Hb_003915_030 Hb_003915_030 Hb_005352_010--Hb_003915_030 Hb_005352_010--Hb_004762_020 Hb_022599_010--Hb_062317_010 Hb_022599_010--Hb_027522_020 Hb_022599_010--Hb_004762_020 Hb_022599_010--Hb_005405_010 Hb_002396_010 Hb_002396_010 Hb_022599_010--Hb_002396_010 Hb_004762_020--Hb_005405_010 Hb_188450_010 Hb_188450_010 Hb_004762_020--Hb_188450_010 Hb_009042_010 Hb_009042_010 Hb_004762_020--Hb_009042_010 Hb_000599_070 Hb_000599_070 Hb_004762_020--Hb_000599_070 Hb_030370_010 Hb_030370_010 Hb_004762_020--Hb_030370_010 Hb_123951_010--Hb_188450_010 Hb_123951_010--Hb_009042_010 Hb_123951_010--Hb_000599_070 Hb_153665_010 Hb_153665_010 Hb_123951_010--Hb_153665_010 Hb_123951_010--Hb_004762_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00405959 0 0 0.0050414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00387967 0.0418758

CAGE analysis