Hb_000418_160

Information

Type -
Description -
Location Contig418: 214307-218570
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_160 0.0 - - -
2 Hb_002072_050 0.1440110581 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
3 Hb_005405_010 0.1592981836 - - -
4 Hb_004762_020 0.1615433234 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_011987_010 0.168099633 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
6 Hb_022599_010 0.1808772451 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
7 Hb_062317_010 0.181894967 - - conserved hypothetical protein [Ricinus communis]
8 Hb_023386_030 0.1876319356 - - -
9 Hb_015824_020 0.1886105876 - - -
10 Hb_094002_010 0.1969734849 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
11 Hb_106274_010 0.198877671 - - hypothetical protein VITISV_008825 [Vitis vinifera]
12 Hb_005666_030 0.1993312599 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
13 Hb_005551_030 0.2007069952 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
14 Hb_001231_020 0.2025521226 - - -
15 Hb_004968_090 0.2030086468 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
16 Hb_011716_120 0.2040525139 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
17 Hb_004129_180 0.207179334 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
18 Hb_011892_010 0.2095866051 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_004048_040 0.2147308763 - - -
20 Hb_000573_080 0.2147311555 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]

Gene co-expression network

sample Hb_000418_160 Hb_000418_160 Hb_002072_050 Hb_002072_050 Hb_000418_160--Hb_002072_050 Hb_005405_010 Hb_005405_010 Hb_000418_160--Hb_005405_010 Hb_004762_020 Hb_004762_020 Hb_000418_160--Hb_004762_020 Hb_011987_010 Hb_011987_010 Hb_000418_160--Hb_011987_010 Hb_022599_010 Hb_022599_010 Hb_000418_160--Hb_022599_010 Hb_062317_010 Hb_062317_010 Hb_000418_160--Hb_062317_010 Hb_023547_010 Hb_023547_010 Hb_002072_050--Hb_023547_010 Hb_005352_010 Hb_005352_010 Hb_002072_050--Hb_005352_010 Hb_002072_050--Hb_022599_010 Hb_002072_050--Hb_004762_020 Hb_123951_010 Hb_123951_010 Hb_002072_050--Hb_123951_010 Hb_005405_010--Hb_004762_020 Hb_188450_010 Hb_188450_010 Hb_005405_010--Hb_188450_010 Hb_009042_010 Hb_009042_010 Hb_005405_010--Hb_009042_010 Hb_000599_070 Hb_000599_070 Hb_005405_010--Hb_000599_070 Hb_005405_010--Hb_022599_010 Hb_030370_010 Hb_030370_010 Hb_005405_010--Hb_030370_010 Hb_004762_020--Hb_188450_010 Hb_004762_020--Hb_009042_010 Hb_004762_020--Hb_000599_070 Hb_004762_020--Hb_022599_010 Hb_004762_020--Hb_030370_010 Hb_106274_010 Hb_106274_010 Hb_011987_010--Hb_106274_010 Hb_001231_020 Hb_001231_020 Hb_011987_010--Hb_001231_020 Hb_005551_030 Hb_005551_030 Hb_011987_010--Hb_005551_030 Hb_005666_030 Hb_005666_030 Hb_011987_010--Hb_005666_030 Hb_004968_090 Hb_004968_090 Hb_011987_010--Hb_004968_090 Hb_015824_020 Hb_015824_020 Hb_011987_010--Hb_015824_020 Hb_022599_010--Hb_062317_010 Hb_027522_020 Hb_027522_020 Hb_022599_010--Hb_027522_020 Hb_022599_010--Hb_005352_010 Hb_002396_010 Hb_002396_010 Hb_022599_010--Hb_002396_010 Hb_062317_010--Hb_027522_020 Hb_110426_010 Hb_110426_010 Hb_062317_010--Hb_110426_010 Hb_000723_150 Hb_000723_150 Hb_062317_010--Hb_000723_150 Hb_002375_100 Hb_002375_100 Hb_062317_010--Hb_002375_100 Hb_001172_110 Hb_001172_110 Hb_062317_010--Hb_001172_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0345033 0 0 0.0406415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.132842 0.634321

CAGE analysis