Hb_007885_110

Information

Type -
Description -
Location Contig7885: 80426-83276
Sequence    

Annotation

kegg
ID mdm:103417687
description uncharacterized LOC103417687
nr
ID XP_009616949.1
description PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M7ZPX9
description Retrovirus-related Pol polyprotein LINE-1 OS=Triticum urartu GN=TRIUR3_20700 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrovirus-related pol polyprotein line-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007885_110 0.0 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
2 Hb_008055_030 0.1262347293 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_005920_030 0.1448027846 - - putative polyprotein [Oryza sativa Japonica Group]
4 Hb_004520_010 0.1620985455 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
5 Hb_001856_280 0.1722902242 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
6 Hb_035651_010 0.1762775945 - - receptor-kinase, putative [Ricinus communis]
7 Hb_019654_170 0.176550883 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
8 Hb_043792_030 0.183327665 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
9 Hb_030885_010 0.1836799535 - - -
10 Hb_000803_230 0.1846134399 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
11 Hb_010490_060 0.1873811278 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
12 Hb_001871_030 0.1875585109 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001385_070 0.1943719319 - - hypothetical protein VITISV_019194 [Vitis vinifera]
14 Hb_008834_010 0.1951229688 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
15 Hb_009848_060 0.1978880784 - - unknown [Glycine max]
16 Hb_040473_010 0.1985956994 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
17 Hb_000820_100 0.2011958747 - - RNA-directed DNA polymerase [Arachis hypogaea]
18 Hb_000346_050 0.2020560987 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
19 Hb_142522_040 0.2067950855 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_127552_050 0.2099187494 - - hypothetical protein VITISV_030752 [Vitis vinifera]

Gene co-expression network

sample Hb_007885_110 Hb_007885_110 Hb_008055_030 Hb_008055_030 Hb_007885_110--Hb_008055_030 Hb_005920_030 Hb_005920_030 Hb_007885_110--Hb_005920_030 Hb_004520_010 Hb_004520_010 Hb_007885_110--Hb_004520_010 Hb_001856_280 Hb_001856_280 Hb_007885_110--Hb_001856_280 Hb_035651_010 Hb_035651_010 Hb_007885_110--Hb_035651_010 Hb_019654_170 Hb_019654_170 Hb_007885_110--Hb_019654_170 Hb_008055_030--Hb_005920_030 Hb_008055_030--Hb_001856_280 Hb_043792_030 Hb_043792_030 Hb_008055_030--Hb_043792_030 Hb_008055_030--Hb_019654_170 Hb_008055_030--Hb_004520_010 Hb_005920_030--Hb_001856_280 Hb_005920_030--Hb_043792_030 Hb_003311_020 Hb_003311_020 Hb_005920_030--Hb_003311_020 Hb_005920_030--Hb_019654_170 Hb_000567_270 Hb_000567_270 Hb_005920_030--Hb_000567_270 Hb_000820_100 Hb_000820_100 Hb_004520_010--Hb_000820_100 Hb_004520_010--Hb_035651_010 Hb_001385_070 Hb_001385_070 Hb_004520_010--Hb_001385_070 Hb_004520_010--Hb_005920_030 Hb_000123_340 Hb_000123_340 Hb_004520_010--Hb_000123_340 Hb_007543_020 Hb_007543_020 Hb_004520_010--Hb_007543_020 Hb_001856_280--Hb_043792_030 Hb_001856_280--Hb_019654_170 Hb_000346_050 Hb_000346_050 Hb_001856_280--Hb_000346_050 Hb_020831_070 Hb_020831_070 Hb_001856_280--Hb_020831_070 Hb_001880_020 Hb_001880_020 Hb_001856_280--Hb_001880_020 Hb_004312_020 Hb_004312_020 Hb_035651_010--Hb_004312_020 Hb_035651_010--Hb_020831_070 Hb_003994_070 Hb_003994_070 Hb_035651_010--Hb_003994_070 Hb_009851_090 Hb_009851_090 Hb_035651_010--Hb_009851_090 Hb_035651_010--Hb_005920_030 Hb_019654_170--Hb_043792_030 Hb_019654_170--Hb_000346_050 Hb_019654_170--Hb_003311_020 Hb_019654_170--Hb_020831_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.278254 0.137749 0.0910906 0.0765881 0.0647604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0593167 0 0 0.828435 1.95618

CAGE analysis