Hb_133047_030

Information

Type -
Description -
Location Contig133047: 34391-38817
Sequence    

Annotation

kegg
ID rcu:RCOM_1577640
description nuclear acid binding protein, putative
nr
ID XP_002513488.1
description nuclear acid binding protein, putative [Ricinus communis]
swissprot
ID Q8VXZ9
description Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1
trembl
ID B9RIB9
description Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_1577640 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein rbp47b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133047_030 0.0 - - nuclear acid binding protein, putative [Ricinus communis]
2 Hb_132317_010 0.0938731888 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_000346_080 0.2119631242 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
4 Hb_012538_010 0.2245800115 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_006103_040 0.2290694457 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_033286_020 0.2546864316 - - -
7 Hb_002888_080 0.2564710613 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
8 Hb_007193_050 0.2611262349 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_024468_040 0.2673961191 - - -
10 Hb_002835_060 0.2730514336 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
11 Hb_001021_050 0.2796426905 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_019641_020 0.2879433436 - - hypothetical protein AALP_AAs49670U000100, partial [Arabis alpina]
13 Hb_006274_020 0.2897481214 - - structural constituent of cell wall, putative [Ricinus communis]
14 Hb_002815_040 0.2909698097 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
15 Hb_000612_050 0.2983685937 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
16 Hb_138667_010 0.3011140274 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
17 Hb_000280_120 0.3028612951 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
18 Hb_000243_050 0.3036212683 - - ADP-ribosylation factor, putative [Ricinus communis]
19 Hb_027380_250 0.3043805549 - - Isoflavone reductase, putative [Ricinus communis]
20 Hb_028872_040 0.3045187438 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_133047_030 Hb_133047_030 Hb_132317_010 Hb_132317_010 Hb_133047_030--Hb_132317_010 Hb_000346_080 Hb_000346_080 Hb_133047_030--Hb_000346_080 Hb_012538_010 Hb_012538_010 Hb_133047_030--Hb_012538_010 Hb_006103_040 Hb_006103_040 Hb_133047_030--Hb_006103_040 Hb_033286_020 Hb_033286_020 Hb_133047_030--Hb_033286_020 Hb_002888_080 Hb_002888_080 Hb_133047_030--Hb_002888_080 Hb_007193_050 Hb_007193_050 Hb_132317_010--Hb_007193_050 Hb_132317_010--Hb_000346_080 Hb_024468_040 Hb_024468_040 Hb_132317_010--Hb_024468_040 Hb_027380_250 Hb_027380_250 Hb_132317_010--Hb_027380_250 Hb_132317_010--Hb_012538_010 Hb_002835_060 Hb_002835_060 Hb_000346_080--Hb_002835_060 Hb_000612_050 Hb_000612_050 Hb_000346_080--Hb_000612_050 Hb_000243_050 Hb_000243_050 Hb_000346_080--Hb_000243_050 Hb_003938_100 Hb_003938_100 Hb_000346_080--Hb_003938_100 Hb_006274_020 Hb_006274_020 Hb_012538_010--Hb_006274_020 Hb_001021_050 Hb_001021_050 Hb_012538_010--Hb_001021_050 Hb_019641_020 Hb_019641_020 Hb_012538_010--Hb_019641_020 Hb_000832_010 Hb_000832_010 Hb_012538_010--Hb_000832_010 Hb_000280_120 Hb_000280_120 Hb_012538_010--Hb_000280_120 Hb_001310_100 Hb_001310_100 Hb_006103_040--Hb_001310_100 Hb_004687_010 Hb_004687_010 Hb_006103_040--Hb_004687_010 Hb_000574_140 Hb_000574_140 Hb_006103_040--Hb_000574_140 Hb_071160_010 Hb_071160_010 Hb_006103_040--Hb_071160_010 Hb_006103_040--Hb_132317_010 Hb_006856_020 Hb_006856_020 Hb_033286_020--Hb_006856_020 Hb_033286_020--Hb_002888_080 Hb_004228_040 Hb_004228_040 Hb_033286_020--Hb_004228_040 Hb_001496_020 Hb_001496_020 Hb_033286_020--Hb_001496_020 Hb_000832_350 Hb_000832_350 Hb_033286_020--Hb_000832_350 Hb_157029_010 Hb_157029_010 Hb_002888_080--Hb_157029_010 Hb_108557_010 Hb_108557_010 Hb_002888_080--Hb_108557_010 Hb_002888_080--Hb_004228_040 Hb_100332_020 Hb_100332_020 Hb_002888_080--Hb_100332_020 Hb_002888_080--Hb_000832_010 Hb_001871_030 Hb_001871_030 Hb_002888_080--Hb_001871_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.066159 0 0 0.0199369 0.0174904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0430584 0.0735967

CAGE analysis