Hb_007193_050

Information

Type -
Description -
Location Contig7193: 102044-106532
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007193_050 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_027380_250 0.0824473089 - - Isoflavone reductase, putative [Ricinus communis]
3 Hb_132317_010 0.1787623629 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_118014_010 0.1863737283 - - PREDICTED: uncharacterized protein LOC104214283 [Nicotiana sylvestris]
5 Hb_000045_060 0.2024770237 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_024468_040 0.2569225545 - - -
7 Hb_133047_030 0.2611262349 - - nuclear acid binding protein, putative [Ricinus communis]
8 Hb_001021_050 0.2904280675 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_014548_030 0.2928992512 - - PREDICTED: uncharacterized protein LOC104897580 [Beta vulgaris subsp. vulgaris]
10 Hb_003992_200 0.3025518625 - - -
11 Hb_004981_010 0.313081775 - - -
12 Hb_000742_150 0.3191609063 - - -
13 Hb_078901_020 0.3307483126 - - PREDICTED: uncharacterized protein LOC105648117 [Jatropha curcas]
14 Hb_003717_020 0.3309746879 - - -
15 Hb_027204_010 0.3322419491 - - -
16 Hb_065661_010 0.3329365024 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
17 Hb_143398_020 0.3401736163 - - PREDICTED: 21 kDa protein [Populus euphratica]
18 Hb_000703_300 0.3456841284 - - -
19 Hb_001366_160 0.348039893 - - -
20 Hb_005401_010 0.3523355706 - - -

Gene co-expression network

sample Hb_007193_050 Hb_007193_050 Hb_027380_250 Hb_027380_250 Hb_007193_050--Hb_027380_250 Hb_132317_010 Hb_132317_010 Hb_007193_050--Hb_132317_010 Hb_118014_010 Hb_118014_010 Hb_007193_050--Hb_118014_010 Hb_000045_060 Hb_000045_060 Hb_007193_050--Hb_000045_060 Hb_024468_040 Hb_024468_040 Hb_007193_050--Hb_024468_040 Hb_133047_030 Hb_133047_030 Hb_007193_050--Hb_133047_030 Hb_027380_250--Hb_118014_010 Hb_027380_250--Hb_000045_060 Hb_027380_250--Hb_132317_010 Hb_078901_020 Hb_078901_020 Hb_027380_250--Hb_078901_020 Hb_001021_050 Hb_001021_050 Hb_027380_250--Hb_001021_050 Hb_132317_010--Hb_133047_030 Hb_000346_080 Hb_000346_080 Hb_132317_010--Hb_000346_080 Hb_132317_010--Hb_024468_040 Hb_012538_010 Hb_012538_010 Hb_132317_010--Hb_012538_010 Hb_118014_010--Hb_000045_060 Hb_004981_010 Hb_004981_010 Hb_118014_010--Hb_004981_010 Hb_118014_010--Hb_078901_020 Hb_001758_030 Hb_001758_030 Hb_118014_010--Hb_001758_030 Hb_065661_010 Hb_065661_010 Hb_000045_060--Hb_065661_010 Hb_000045_060--Hb_004981_010 Hb_003717_020 Hb_003717_020 Hb_000045_060--Hb_003717_020 Hb_042463_050 Hb_042463_050 Hb_024468_040--Hb_042463_050 Hb_027204_010 Hb_027204_010 Hb_024468_040--Hb_027204_010 Hb_000473_160 Hb_000473_160 Hb_024468_040--Hb_000473_160 Hb_006405_040 Hb_006405_040 Hb_024468_040--Hb_006405_040 Hb_133047_030--Hb_000346_080 Hb_133047_030--Hb_012538_010 Hb_006103_040 Hb_006103_040 Hb_133047_030--Hb_006103_040 Hb_033286_020 Hb_033286_020 Hb_133047_030--Hb_033286_020 Hb_002888_080 Hb_002888_080 Hb_133047_030--Hb_002888_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.022324 0 0 0.0136045 0.0174979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00342245 0.0370256

CAGE analysis