Hb_024468_040

Information

Type -
Description -
Location Contig24468: 16446-24997
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024468_040 0.0 - - -
2 Hb_042463_050 0.1865042817 - - conserved hypothetical protein [Ricinus communis]
3 Hb_027204_010 0.2298310427 - - -
4 Hb_132317_010 0.233491962 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_000473_160 0.2556254521 - - PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
6 Hb_007193_050 0.2569225545 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_006405_040 0.2612031601 - - hypothetical protein VITISV_026680 [Vitis vinifera]
8 Hb_000269_040 0.2634515591 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_011288_010 0.2636455218 - - hypothetical protein, partial [Pseudomonas fluorescens]
10 Hb_133047_030 0.2673961191 - - nuclear acid binding protein, putative [Ricinus communis]
11 Hb_172426_010 0.270965785 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
12 Hb_002013_030 0.2729718047 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
13 Hb_009898_060 0.2765479599 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
14 Hb_010863_070 0.2779047508 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
15 Hb_181402_010 0.2801337018 - - PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
16 Hb_001021_050 0.2836731866 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_027337_050 0.2837022682 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_007575_020 0.2851120242 - - cytochrome P450, putative [Ricinus communis]
19 Hb_005401_010 0.2901455937 - - -
20 Hb_000076_050 0.2904473102 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]

Gene co-expression network

sample Hb_024468_040 Hb_024468_040 Hb_042463_050 Hb_042463_050 Hb_024468_040--Hb_042463_050 Hb_027204_010 Hb_027204_010 Hb_024468_040--Hb_027204_010 Hb_132317_010 Hb_132317_010 Hb_024468_040--Hb_132317_010 Hb_000473_160 Hb_000473_160 Hb_024468_040--Hb_000473_160 Hb_007193_050 Hb_007193_050 Hb_024468_040--Hb_007193_050 Hb_006405_040 Hb_006405_040 Hb_024468_040--Hb_006405_040 Hb_004884_210 Hb_004884_210 Hb_042463_050--Hb_004884_210 Hb_172426_010 Hb_172426_010 Hb_042463_050--Hb_172426_010 Hb_004372_050 Hb_004372_050 Hb_042463_050--Hb_004372_050 Hb_001999_050 Hb_001999_050 Hb_042463_050--Hb_001999_050 Hb_002030_050 Hb_002030_050 Hb_042463_050--Hb_002030_050 Hb_065661_010 Hb_065661_010 Hb_027204_010--Hb_065661_010 Hb_000045_060 Hb_000045_060 Hb_027204_010--Hb_000045_060 Hb_181402_010 Hb_181402_010 Hb_027204_010--Hb_181402_010 Hb_000392_510 Hb_000392_510 Hb_027204_010--Hb_000392_510 Hb_000640_280 Hb_000640_280 Hb_027204_010--Hb_000640_280 Hb_133047_030 Hb_133047_030 Hb_132317_010--Hb_133047_030 Hb_132317_010--Hb_007193_050 Hb_000346_080 Hb_000346_080 Hb_132317_010--Hb_000346_080 Hb_027380_250 Hb_027380_250 Hb_132317_010--Hb_027380_250 Hb_012538_010 Hb_012538_010 Hb_132317_010--Hb_012538_010 Hb_067472_010 Hb_067472_010 Hb_000473_160--Hb_067472_010 Hb_002013_030 Hb_002013_030 Hb_000473_160--Hb_002013_030 Hb_116784_020 Hb_116784_020 Hb_000473_160--Hb_116784_020 Hb_000352_060 Hb_000352_060 Hb_000473_160--Hb_000352_060 Hb_011649_030 Hb_011649_030 Hb_000473_160--Hb_011649_030 Hb_001385_070 Hb_001385_070 Hb_000473_160--Hb_001385_070 Hb_007193_050--Hb_027380_250 Hb_118014_010 Hb_118014_010 Hb_007193_050--Hb_118014_010 Hb_007193_050--Hb_000045_060 Hb_007193_050--Hb_133047_030 Hb_102602_020 Hb_102602_020 Hb_006405_040--Hb_102602_020 Hb_006405_040--Hb_001385_070 Hb_000803_230 Hb_000803_230 Hb_006405_040--Hb_000803_230 Hb_144027_010 Hb_144027_010 Hb_006405_040--Hb_144027_010 Hb_007543_020 Hb_007543_020 Hb_006405_040--Hb_007543_020 Hb_003900_040 Hb_003900_040 Hb_006405_040--Hb_003900_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0724386 0 0.0107827 0.0136492 0.0147428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0104389 0.109088

CAGE analysis