Hb_027380_250

Information

Type -
Description -
Location Contig27380: 243286-249473
Sequence    

Annotation

kegg
ID rcu:RCOM_1288520
description Isoflavone reductase, putative (EC:1.3.1.45)
nr
ID XP_002531055.1
description Isoflavone reductase, putative [Ricinus communis]
swissprot
ID E1U332
description Isoflavone reductase-like protein OS=Olea europaea PE=1 SV=1
trembl
ID B9SYI6
description Isoflavone reductase, putative OS=Ricinus communis GN=RCOM_1288520 PE=4 SV=1
Gene Ontology
ID GO:0047526
description isoflavone reductase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28621: 246512-246629 , PASA_asmbl_28622: 246669-246771
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_250 0.0 - - Isoflavone reductase, putative [Ricinus communis]
2 Hb_007193_050 0.0824473089 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_118014_010 0.142125135 - - PREDICTED: uncharacterized protein LOC104214283 [Nicotiana sylvestris]
4 Hb_000045_060 0.1949532373 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_132317_010 0.234271322 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_078901_020 0.2845221547 - - PREDICTED: uncharacterized protein LOC105648117 [Jatropha curcas]
7 Hb_001021_050 0.2987812489 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_133047_030 0.3043805549 - - nuclear acid binding protein, putative [Ricinus communis]
9 Hb_024468_040 0.3089359523 - - -
10 Hb_014548_030 0.3133671657 - - PREDICTED: uncharacterized protein LOC104897580 [Beta vulgaris subsp. vulgaris]
11 Hb_004981_010 0.3134617211 - - -
12 Hb_005241_020 0.3448635226 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
13 Hb_000742_150 0.3471186551 - - -
14 Hb_003717_020 0.3514523964 - - -
15 Hb_001758_030 0.3542240293 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
16 Hb_143398_020 0.3544094277 - - PREDICTED: 21 kDa protein [Populus euphratica]
17 Hb_003992_200 0.3586309291 - - -
18 Hb_004361_020 0.3630268656 - - PREDICTED: uncharacterized protein LOC102625775 [Citrus sinensis]
19 Hb_027204_010 0.364303299 - - -
20 Hb_006674_020 0.3643521873 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_027380_250 Hb_027380_250 Hb_007193_050 Hb_007193_050 Hb_027380_250--Hb_007193_050 Hb_118014_010 Hb_118014_010 Hb_027380_250--Hb_118014_010 Hb_000045_060 Hb_000045_060 Hb_027380_250--Hb_000045_060 Hb_132317_010 Hb_132317_010 Hb_027380_250--Hb_132317_010 Hb_078901_020 Hb_078901_020 Hb_027380_250--Hb_078901_020 Hb_001021_050 Hb_001021_050 Hb_027380_250--Hb_001021_050 Hb_007193_050--Hb_132317_010 Hb_007193_050--Hb_118014_010 Hb_007193_050--Hb_000045_060 Hb_024468_040 Hb_024468_040 Hb_007193_050--Hb_024468_040 Hb_133047_030 Hb_133047_030 Hb_007193_050--Hb_133047_030 Hb_118014_010--Hb_000045_060 Hb_004981_010 Hb_004981_010 Hb_118014_010--Hb_004981_010 Hb_118014_010--Hb_078901_020 Hb_001758_030 Hb_001758_030 Hb_118014_010--Hb_001758_030 Hb_065661_010 Hb_065661_010 Hb_000045_060--Hb_065661_010 Hb_000045_060--Hb_004981_010 Hb_003717_020 Hb_003717_020 Hb_000045_060--Hb_003717_020 Hb_132317_010--Hb_133047_030 Hb_000346_080 Hb_000346_080 Hb_132317_010--Hb_000346_080 Hb_132317_010--Hb_024468_040 Hb_012538_010 Hb_012538_010 Hb_132317_010--Hb_012538_010 Hb_001303_070 Hb_001303_070 Hb_078901_020--Hb_001303_070 Hb_184746_010 Hb_184746_010 Hb_078901_020--Hb_184746_010 Hb_078901_020--Hb_000045_060 Hb_078901_020--Hb_007193_050 Hb_001021_050--Hb_012538_010 Hb_001021_050--Hb_004981_010 Hb_143398_020 Hb_143398_020 Hb_001021_050--Hb_143398_020 Hb_001021_050--Hb_003717_020 Hb_001021_050--Hb_132317_010 Hb_001021_050--Hb_133047_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0501839 0 0 0.030442 0.0621173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.007721 0.0817638

CAGE analysis