Hb_143398_020

Information

Type -
Description -
Location Contig143398: 6320-6871
Sequence    

Annotation

kegg
ID rcu:RCOM_1178190
description 21 kDa protein precursor, putative
nr
ID XP_011033536.1
description PREDICTED: 21 kDa protein [Populus euphratica]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID B9SAR6
description 21 kDa protein, putative OS=Ricinus communis GN=RCOM_1178190 PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143398_020 0.0 - - PREDICTED: 21 kDa protein [Populus euphratica]
2 Hb_004235_020 0.1180836017 - - PREDICTED: uncharacterized protein LOC103322555 [Prunus mume]
3 Hb_009888_010 0.1471859221 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_065395_020 0.192425615 - - receptor-kinase, putative [Ricinus communis]
5 Hb_001021_050 0.2239692975 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_032717_090 0.2286871051 - - conserved hypothetical protein [Ricinus communis]
7 Hb_123951_010 0.2511575306 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
8 Hb_008680_010 0.2571950729 - - -
9 Hb_004981_010 0.2582635221 - - -
10 Hb_188450_010 0.2591599828 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_009042_010 0.2591928405 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_000599_070 0.2606116324 - - PREDICTED: patellin-4-like [Jatropha curcas]
13 Hb_001496_050 0.2639440382 - - yth domain-containing protein, putative [Ricinus communis]
14 Hb_062317_020 0.2641393731 - - conserved hypothetical protein [Ricinus communis]
15 Hb_153665_010 0.2651001984 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
16 Hb_003900_040 0.2754051046 - - hypothetical protein [Lotus japonicus]
17 Hb_012538_010 0.2761211062 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_004762_020 0.2774914471 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_029238_030 0.2780848473 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
20 Hb_180214_010 0.2788704554 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_143398_020 Hb_143398_020 Hb_004235_020 Hb_004235_020 Hb_143398_020--Hb_004235_020 Hb_009888_010 Hb_009888_010 Hb_143398_020--Hb_009888_010 Hb_065395_020 Hb_065395_020 Hb_143398_020--Hb_065395_020 Hb_001021_050 Hb_001021_050 Hb_143398_020--Hb_001021_050 Hb_032717_090 Hb_032717_090 Hb_143398_020--Hb_032717_090 Hb_123951_010 Hb_123951_010 Hb_143398_020--Hb_123951_010 Hb_004235_020--Hb_009888_010 Hb_004235_020--Hb_032717_090 Hb_008680_010 Hb_008680_010 Hb_004235_020--Hb_008680_010 Hb_004235_020--Hb_065395_020 Hb_004445_030 Hb_004445_030 Hb_004235_020--Hb_004445_030 Hb_005352_010 Hb_005352_010 Hb_009888_010--Hb_005352_010 Hb_027522_020 Hb_027522_020 Hb_009888_010--Hb_027522_020 Hb_009888_010--Hb_123951_010 Hb_022599_010 Hb_022599_010 Hb_009888_010--Hb_022599_010 Hb_004981_010 Hb_004981_010 Hb_065395_020--Hb_004981_010 Hb_065395_020--Hb_009888_010 Hb_003717_020 Hb_003717_020 Hb_065395_020--Hb_003717_020 Hb_004678_070 Hb_004678_070 Hb_065395_020--Hb_004678_070 Hb_012538_010 Hb_012538_010 Hb_001021_050--Hb_012538_010 Hb_001021_050--Hb_004981_010 Hb_001021_050--Hb_003717_020 Hb_132317_010 Hb_132317_010 Hb_001021_050--Hb_132317_010 Hb_133047_030 Hb_133047_030 Hb_001021_050--Hb_133047_030 Hb_180214_010 Hb_180214_010 Hb_032717_090--Hb_180214_010 Hb_003900_040 Hb_003900_040 Hb_032717_090--Hb_003900_040 Hb_003169_040 Hb_003169_040 Hb_032717_090--Hb_003169_040 Hb_032717_090--Hb_008680_010 Hb_001383_080 Hb_001383_080 Hb_032717_090--Hb_001383_080 Hb_188450_010 Hb_188450_010 Hb_123951_010--Hb_188450_010 Hb_009042_010 Hb_009042_010 Hb_123951_010--Hb_009042_010 Hb_000599_070 Hb_000599_070 Hb_123951_010--Hb_000599_070 Hb_153665_010 Hb_153665_010 Hb_123951_010--Hb_153665_010 Hb_004762_020 Hb_004762_020 Hb_123951_010--Hb_004762_020 Hb_123951_010--Hb_005352_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.125739 0 0 0 0.160122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0742708 0.687161

CAGE analysis