Hb_004678_070

Information

Type -
Description -
Location Contig4678: 74313-77881
Sequence    

Annotation

kegg
ID fve:101299142
description LRR receptor-like serine/threonine-protein kinase EFR-like
nr
ID XP_012091060.1
description PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
swissprot
ID Q9SD62
description Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1
trembl
ID B9RVA8
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0901450 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004678_070 0.0 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
2 Hb_097981_010 0.1405410607 - - -
3 Hb_001758_030 0.1969765516 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
4 Hb_065395_020 0.2480414458 - - receptor-kinase, putative [Ricinus communis]
5 Hb_003540_070 0.2768981879 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
6 Hb_004981_010 0.2791391581 - - -
7 Hb_002471_280 0.2792979377 - - PREDICTED: cyclin-SDS [Jatropha curcas]
8 Hb_181402_010 0.2810370754 - - PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
9 Hb_000138_180 0.2827070789 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
10 Hb_167136_010 0.2829815788 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_001267_020 0.2856377562 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
12 Hb_004068_010 0.2921379511 - - beta-amyrin synthase [Euphorbia tirucalli]
13 Hb_006827_010 0.2962572994 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
14 Hb_062317_020 0.2962932877 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008484_020 0.297215933 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
16 Hb_002990_020 0.2978311217 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
17 Hb_002474_020 0.3026617197 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104585652 [Nelumbo nucifera]
18 Hb_004643_020 0.3034574943 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
19 Hb_004235_020 0.3037267823 - - PREDICTED: uncharacterized protein LOC103322555 [Prunus mume]
20 Hb_172486_010 0.3037618605 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004678_070 Hb_004678_070 Hb_097981_010 Hb_097981_010 Hb_004678_070--Hb_097981_010 Hb_001758_030 Hb_001758_030 Hb_004678_070--Hb_001758_030 Hb_065395_020 Hb_065395_020 Hb_004678_070--Hb_065395_020 Hb_003540_070 Hb_003540_070 Hb_004678_070--Hb_003540_070 Hb_004981_010 Hb_004981_010 Hb_004678_070--Hb_004981_010 Hb_002471_280 Hb_002471_280 Hb_004678_070--Hb_002471_280 Hb_097981_010--Hb_001758_030 Hb_105123_020 Hb_105123_020 Hb_097981_010--Hb_105123_020 Hb_095399_010 Hb_095399_010 Hb_097981_010--Hb_095399_010 Hb_097981_010--Hb_004981_010 Hb_062317_020 Hb_062317_020 Hb_097981_010--Hb_062317_020 Hb_001758_030--Hb_004981_010 Hb_181402_010 Hb_181402_010 Hb_001758_030--Hb_181402_010 Hb_001758_030--Hb_105123_020 Hb_003717_020 Hb_003717_020 Hb_001758_030--Hb_003717_020 Hb_065395_020--Hb_004981_010 Hb_004235_020 Hb_004235_020 Hb_065395_020--Hb_004235_020 Hb_143398_020 Hb_143398_020 Hb_065395_020--Hb_143398_020 Hb_009888_010 Hb_009888_010 Hb_065395_020--Hb_009888_010 Hb_065395_020--Hb_003717_020 Hb_003291_030 Hb_003291_030 Hb_003540_070--Hb_003291_030 Hb_008484_020 Hb_008484_020 Hb_003540_070--Hb_008484_020 Hb_001295_080 Hb_001295_080 Hb_003540_070--Hb_001295_080 Hb_023738_010 Hb_023738_010 Hb_003540_070--Hb_023738_010 Hb_000951_070 Hb_000951_070 Hb_003540_070--Hb_000951_070 Hb_029510_060 Hb_029510_060 Hb_003540_070--Hb_029510_060 Hb_004981_010--Hb_003717_020 Hb_001021_050 Hb_001021_050 Hb_004981_010--Hb_001021_050 Hb_004981_010--Hb_181402_010 Hb_000045_060 Hb_000045_060 Hb_004981_010--Hb_000045_060 Hb_167136_010 Hb_167136_010 Hb_002471_280--Hb_167136_010 Hb_012691_060 Hb_012691_060 Hb_002471_280--Hb_012691_060 Hb_004372_050 Hb_004372_050 Hb_002471_280--Hb_004372_050 Hb_002990_020 Hb_002990_020 Hb_002471_280--Hb_002990_020 Hb_000138_180 Hb_000138_180 Hb_002471_280--Hb_000138_180 Hb_043127_010 Hb_043127_010 Hb_002471_280--Hb_043127_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00648258 0 0.00489373 0 0.00572659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0249501

CAGE analysis