Hb_009888_010

Information

Type -
Description -
Location Contig9888: 18652-23690
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044383.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0003824
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009888_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_004235_020 0.0873933884 - - PREDICTED: uncharacterized protein LOC103322555 [Prunus mume]
3 Hb_143398_020 0.1471859221 - - PREDICTED: 21 kDa protein [Populus euphratica]
4 Hb_005352_010 0.164392088 - - -
5 Hb_027522_020 0.1847668695 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_123951_010 0.1851624674 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
7 Hb_022599_010 0.1924642684 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
8 Hb_029238_030 0.2025813348 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
9 Hb_032717_090 0.2117659129 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004762_020 0.2142146233 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_065395_020 0.2167442263 - - receptor-kinase, putative [Ricinus communis]
12 Hb_188450_010 0.2200625608 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_005405_010 0.2202925083 - - -
14 Hb_009042_010 0.2204561819 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_023547_010 0.2235225864 - - protein binding protein, putative [Ricinus communis]
16 Hb_062317_010 0.2257531068 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008680_010 0.2283831054 - - -
18 Hb_000599_070 0.2296922776 - - PREDICTED: patellin-4-like [Jatropha curcas]
19 Hb_001490_020 0.2304790454 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_005986_020 0.2312807166 - - putative polyprotein [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_009888_010 Hb_009888_010 Hb_004235_020 Hb_004235_020 Hb_009888_010--Hb_004235_020 Hb_143398_020 Hb_143398_020 Hb_009888_010--Hb_143398_020 Hb_005352_010 Hb_005352_010 Hb_009888_010--Hb_005352_010 Hb_027522_020 Hb_027522_020 Hb_009888_010--Hb_027522_020 Hb_123951_010 Hb_123951_010 Hb_009888_010--Hb_123951_010 Hb_022599_010 Hb_022599_010 Hb_009888_010--Hb_022599_010 Hb_004235_020--Hb_143398_020 Hb_032717_090 Hb_032717_090 Hb_004235_020--Hb_032717_090 Hb_008680_010 Hb_008680_010 Hb_004235_020--Hb_008680_010 Hb_065395_020 Hb_065395_020 Hb_004235_020--Hb_065395_020 Hb_004445_030 Hb_004445_030 Hb_004235_020--Hb_004445_030 Hb_143398_020--Hb_065395_020 Hb_001021_050 Hb_001021_050 Hb_143398_020--Hb_001021_050 Hb_143398_020--Hb_032717_090 Hb_143398_020--Hb_123951_010 Hb_005352_010--Hb_027522_020 Hb_005352_010--Hb_022599_010 Hb_062317_010 Hb_062317_010 Hb_005352_010--Hb_062317_010 Hb_005352_010--Hb_123951_010 Hb_003915_030 Hb_003915_030 Hb_005352_010--Hb_003915_030 Hb_004762_020 Hb_004762_020 Hb_005352_010--Hb_004762_020 Hb_027522_020--Hb_022599_010 Hb_027522_020--Hb_062317_010 Hb_027522_020--Hb_003915_030 Hb_006778_010 Hb_006778_010 Hb_027522_020--Hb_006778_010 Hb_001255_070 Hb_001255_070 Hb_027522_020--Hb_001255_070 Hb_188450_010 Hb_188450_010 Hb_123951_010--Hb_188450_010 Hb_009042_010 Hb_009042_010 Hb_123951_010--Hb_009042_010 Hb_000599_070 Hb_000599_070 Hb_123951_010--Hb_000599_070 Hb_153665_010 Hb_153665_010 Hb_123951_010--Hb_153665_010 Hb_123951_010--Hb_004762_020 Hb_022599_010--Hb_062317_010 Hb_022599_010--Hb_004762_020 Hb_005405_010 Hb_005405_010 Hb_022599_010--Hb_005405_010 Hb_002396_010 Hb_002396_010 Hb_022599_010--Hb_002396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00905379 0 0 0 0.0197229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00778084 0.146964

CAGE analysis