Hb_065661_010

Information

Type -
Description -
Location Contig65661: 13-903
Sequence    

Annotation

kegg
ID tcc:TCM_023016
description Gag protease polyprotein
nr
ID XP_012085041.1
description PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061EVR0
description Gag protease polyprotein OS=Theobroma cacao GN=TCM_023016 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065661_010 0.0 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
2 Hb_027204_010 0.1889167447 - - -
3 Hb_000045_060 0.231309014 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_002092_140 0.2697083479 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
5 Hb_166828_010 0.2700875631 - - -
6 Hb_000640_280 0.2723873477 - - Stachyose synthase precursor, putative [Ricinus communis]
7 Hb_000002_280 0.2793509888 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
8 Hb_000320_170 0.2833079968 - - conserved hypothetical protein [Ricinus communis]
9 Hb_080873_010 0.2835307047 - - -
10 Hb_003717_020 0.284299363 - - -
11 Hb_002836_030 0.2882246547 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
12 Hb_000300_240 0.2889728465 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
13 Hb_003582_050 0.2895227355 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
14 Hb_144813_010 0.2943474722 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
15 Hb_000892_040 0.3045110621 - - -
16 Hb_005401_010 0.30702159 - - -
17 Hb_011888_010 0.3081706519 - - Receptor like protein 46, putative [Theobroma cacao]
18 Hb_024468_040 0.3085227105 - - -
19 Hb_071998_010 0.3100192774 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
20 Hb_000392_510 0.315217154 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]

Gene co-expression network

sample Hb_065661_010 Hb_065661_010 Hb_027204_010 Hb_027204_010 Hb_065661_010--Hb_027204_010 Hb_000045_060 Hb_000045_060 Hb_065661_010--Hb_000045_060 Hb_002092_140 Hb_002092_140 Hb_065661_010--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_065661_010--Hb_166828_010 Hb_000640_280 Hb_000640_280 Hb_065661_010--Hb_000640_280 Hb_000002_280 Hb_000002_280 Hb_065661_010--Hb_000002_280 Hb_024468_040 Hb_024468_040 Hb_027204_010--Hb_024468_040 Hb_027204_010--Hb_000045_060 Hb_181402_010 Hb_181402_010 Hb_027204_010--Hb_181402_010 Hb_000392_510 Hb_000392_510 Hb_027204_010--Hb_000392_510 Hb_027204_010--Hb_000640_280 Hb_118014_010 Hb_118014_010 Hb_000045_060--Hb_118014_010 Hb_027380_250 Hb_027380_250 Hb_000045_060--Hb_027380_250 Hb_007193_050 Hb_007193_050 Hb_000045_060--Hb_007193_050 Hb_004981_010 Hb_004981_010 Hb_000045_060--Hb_004981_010 Hb_003717_020 Hb_003717_020 Hb_000045_060--Hb_003717_020 Hb_002092_140--Hb_166828_010 Hb_080873_010 Hb_080873_010 Hb_002092_140--Hb_080873_010 Hb_000320_170 Hb_000320_170 Hb_002092_140--Hb_000320_170 Hb_002836_030 Hb_002836_030 Hb_002092_140--Hb_002836_030 Hb_003582_050 Hb_003582_050 Hb_002092_140--Hb_003582_050 Hb_002092_140--Hb_000002_280 Hb_166828_010--Hb_000320_170 Hb_166828_010--Hb_002836_030 Hb_166828_010--Hb_003582_050 Hb_166828_010--Hb_080873_010 Hb_144813_010 Hb_144813_010 Hb_166828_010--Hb_144813_010 Hb_000640_280--Hb_000002_280 Hb_000243_310 Hb_000243_310 Hb_000640_280--Hb_000243_310 Hb_002890_350 Hb_002890_350 Hb_000640_280--Hb_002890_350 Hb_000300_240 Hb_000300_240 Hb_000640_280--Hb_000300_240 Hb_011344_150 Hb_011344_150 Hb_000640_280--Hb_011344_150 Hb_000640_280--Hb_000392_510 Hb_000002_280--Hb_000300_240 Hb_000002_280--Hb_166828_010 Hb_002571_050 Hb_002571_050 Hb_000002_280--Hb_002571_050 Hb_000002_280--Hb_080873_010 Hb_010091_040 Hb_010091_040 Hb_000002_280--Hb_010091_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.212673 0 0 0.0258252 0.0243272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.100369

CAGE analysis