Hb_000243_310

Information

Type -
Description -
Location Contig243: 271978-273421
Sequence    

Annotation

kegg
ID rcu:RCOM_0291830
description lactoylglutathione lyase, putative
nr
ID XP_002531512.1
description lactoylglutathione lyase, putative [Ricinus communis]
swissprot
ID Q65KJ5
description Metallothiol transferase FosB OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46) GN=fosB PE=3 SV=1
trembl
ID B9SZU3
description Lactoylglutathione lyase, putative OS=Ricinus communis GN=RCOM_0291830 PE=4 SV=1
Gene Ontology
ID GO:0016740
description lactoylglutathione lyase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25398: 272286-273346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_310 0.0 - - lactoylglutathione lyase, putative [Ricinus communis]
2 Hb_002571_050 0.1768514058 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
3 Hb_034013_010 0.1810608448 - - hypothetical protein JCGZ_21944 [Jatropha curcas]
4 Hb_000002_280 0.1818616856 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
5 Hb_000029_180 0.1855282736 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
6 Hb_002025_240 0.1878887356 - - -
7 Hb_001899_040 0.18870084 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
8 Hb_002218_060 0.1904777501 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010091_040 0.1916577312 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
10 Hb_000640_280 0.1919596349 - - Stachyose synthase precursor, putative [Ricinus communis]
11 Hb_052764_010 0.1964033479 - - hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
12 Hb_027337_050 0.1991378274 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_000205_220 0.2036658874 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
14 Hb_000333_120 0.2048938019 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
15 Hb_002871_170 0.2103463427 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
16 Hb_108055_010 0.2106003735 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_130579_050 0.2107060708 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
18 Hb_005545_080 0.2107666745 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
19 Hb_000815_150 0.2113464108 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
20 Hb_000347_380 0.2127126593 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000243_310 Hb_000243_310 Hb_002571_050 Hb_002571_050 Hb_000243_310--Hb_002571_050 Hb_034013_010 Hb_034013_010 Hb_000243_310--Hb_034013_010 Hb_000002_280 Hb_000002_280 Hb_000243_310--Hb_000002_280 Hb_000029_180 Hb_000029_180 Hb_000243_310--Hb_000029_180 Hb_002025_240 Hb_002025_240 Hb_000243_310--Hb_002025_240 Hb_001899_040 Hb_001899_040 Hb_000243_310--Hb_001899_040 Hb_002221_020 Hb_002221_020 Hb_002571_050--Hb_002221_020 Hb_002571_050--Hb_001899_040 Hb_002571_050--Hb_000002_280 Hb_005081_090 Hb_005081_090 Hb_002571_050--Hb_005081_090 Hb_000915_220 Hb_000915_220 Hb_002571_050--Hb_000915_220 Hb_000300_240 Hb_000300_240 Hb_002571_050--Hb_000300_240 Hb_002871_170 Hb_002871_170 Hb_034013_010--Hb_002871_170 Hb_004884_210 Hb_004884_210 Hb_034013_010--Hb_004884_210 Hb_010055_020 Hb_010055_020 Hb_034013_010--Hb_010055_020 Hb_000002_090 Hb_000002_090 Hb_034013_010--Hb_000002_090 Hb_001989_080 Hb_001989_080 Hb_034013_010--Hb_001989_080 Hb_000112_040 Hb_000112_040 Hb_034013_010--Hb_000112_040 Hb_000002_280--Hb_000300_240 Hb_002092_140 Hb_002092_140 Hb_000002_280--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_000002_280--Hb_166828_010 Hb_080873_010 Hb_080873_010 Hb_000002_280--Hb_080873_010 Hb_010091_040 Hb_010091_040 Hb_000002_280--Hb_010091_040 Hb_000465_380 Hb_000465_380 Hb_000029_180--Hb_000465_380 Hb_030370_070 Hb_030370_070 Hb_000029_180--Hb_030370_070 Hb_002218_060 Hb_002218_060 Hb_000029_180--Hb_002218_060 Hb_108055_010 Hb_108055_010 Hb_000029_180--Hb_108055_010 Hb_010327_010 Hb_010327_010 Hb_000029_180--Hb_010327_010 Hb_129399_010 Hb_129399_010 Hb_000029_180--Hb_129399_010 Hb_130579_050 Hb_130579_050 Hb_002025_240--Hb_130579_050 Hb_003442_120 Hb_003442_120 Hb_002025_240--Hb_003442_120 Hb_118046_010 Hb_118046_010 Hb_002025_240--Hb_118046_010 Hb_004063_010 Hb_004063_010 Hb_002025_240--Hb_004063_010 Hb_003727_060 Hb_003727_060 Hb_002025_240--Hb_003727_060 Hb_027337_050 Hb_027337_050 Hb_002025_240--Hb_027337_050 Hb_001899_040--Hb_027337_050 Hb_009898_060 Hb_009898_060 Hb_001899_040--Hb_009898_060 Hb_001899_040--Hb_000300_240 Hb_038190_030 Hb_038190_030 Hb_001899_040--Hb_038190_030 Hb_001899_040--Hb_000002_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.487191 99.1526 9.92085 1.92693 0.601737 0.200575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24571 0.857259 0.525294 5.74844 41.8643

CAGE analysis