Hb_011344_150

Information

Type -
Description -
Location Contig11344: 141120-141965
Sequence    

Annotation

kegg
ID cit:102627079
description uncharacterized LOC102627079
nr
ID AHC13197.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID -
description -
trembl
ID V9QEC8
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003824
description polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04008: 128199-147859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_150 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_006040_080 0.1537362384 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010091_040 0.174892504 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
4 Hb_052764_010 0.1776061331 - - hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
5 Hb_000002_280 0.1963129671 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
6 Hb_042141_010 0.1981489023 - - -
7 Hb_000640_280 0.2002985793 - - Stachyose synthase precursor, putative [Ricinus communis]
8 Hb_166828_010 0.205997846 - - -
9 Hb_000205_220 0.2060300927 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
10 Hb_002092_140 0.2086449379 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
11 Hb_000320_170 0.2098178381 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002836_030 0.2137878871 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
13 Hb_003582_050 0.2149045657 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
14 Hb_144813_010 0.2192379661 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
15 Hb_002284_040 0.2217509212 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
16 Hb_011888_010 0.2326863353 - - Receptor like protein 46, putative [Theobroma cacao]
17 Hb_071998_010 0.2345606665 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
18 Hb_006043_030 0.2369982276 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_083663_010 0.2380601115 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
20 Hb_000300_240 0.2385598553 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_011344_150 Hb_011344_150 Hb_006040_080 Hb_006040_080 Hb_011344_150--Hb_006040_080 Hb_010091_040 Hb_010091_040 Hb_011344_150--Hb_010091_040 Hb_052764_010 Hb_052764_010 Hb_011344_150--Hb_052764_010 Hb_000002_280 Hb_000002_280 Hb_011344_150--Hb_000002_280 Hb_042141_010 Hb_042141_010 Hb_011344_150--Hb_042141_010 Hb_000640_280 Hb_000640_280 Hb_011344_150--Hb_000640_280 Hb_006040_080--Hb_010091_040 Hb_002284_040 Hb_002284_040 Hb_006040_080--Hb_002284_040 Hb_006040_080--Hb_052764_010 Hb_006040_080--Hb_000002_280 Hb_006040_080--Hb_000640_280 Hb_010091_040--Hb_052764_010 Hb_000205_220 Hb_000205_220 Hb_010091_040--Hb_000205_220 Hb_010091_040--Hb_002284_040 Hb_007858_030 Hb_007858_030 Hb_010091_040--Hb_007858_030 Hb_010091_040--Hb_000002_280 Hb_010091_040--Hb_042141_010 Hb_052764_010--Hb_000205_220 Hb_052764_010--Hb_042141_010 Hb_063869_010 Hb_063869_010 Hb_052764_010--Hb_063869_010 Hb_052764_010--Hb_007858_030 Hb_052764_010--Hb_002284_040 Hb_000300_240 Hb_000300_240 Hb_000002_280--Hb_000300_240 Hb_002092_140 Hb_002092_140 Hb_000002_280--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_000002_280--Hb_166828_010 Hb_002571_050 Hb_002571_050 Hb_000002_280--Hb_002571_050 Hb_080873_010 Hb_080873_010 Hb_000002_280--Hb_080873_010 Hb_007507_030 Hb_007507_030 Hb_042141_010--Hb_007507_030 Hb_042141_010--Hb_063869_010 Hb_101778_010 Hb_101778_010 Hb_042141_010--Hb_101778_010 Hb_042141_010--Hb_000205_220 Hb_137701_020 Hb_137701_020 Hb_042141_010--Hb_137701_020 Hb_000640_280--Hb_000002_280 Hb_000243_310 Hb_000243_310 Hb_000640_280--Hb_000243_310 Hb_002890_350 Hb_002890_350 Hb_000640_280--Hb_002890_350 Hb_000640_280--Hb_000300_240 Hb_000392_510 Hb_000392_510 Hb_000640_280--Hb_000392_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.027287 0.343059 0.0205163 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.199015

CAGE analysis