Hb_002284_040

Information

Type transcription factor
Description TF Family: NAC
Location Contig2284: 40136-42574
Sequence    

Annotation

kegg
ID rcu:RCOM_1601970
description transcription factor, putative
nr
ID XP_002510719.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9S851
description Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1
trembl
ID B9R8S6
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1601970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein cup-shaped cotyledon 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23792: 41230-41350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_040 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_010091_040 0.1011530279 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
3 Hb_000892_040 0.1433290651 - - -
4 Hb_080873_010 0.1452872766 - - -
5 Hb_007858_030 0.1469274292 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
6 Hb_052764_010 0.1548247186 - - hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
7 Hb_000205_220 0.1570433035 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
8 Hb_000002_280 0.1629759278 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
9 Hb_091913_010 0.1753213938 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
10 Hb_000059_160 0.184088783 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
11 Hb_002092_140 0.1862107495 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
12 Hb_003867_030 0.1914438332 - - -
13 Hb_007590_040 0.193111648 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
14 Hb_166828_010 0.197062784 - - -
15 Hb_002218_060 0.2021478635 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002571_050 0.2023136057 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
17 Hb_000501_180 0.2023379232 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
18 Hb_008897_020 0.2133263202 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Musa acuminata subsp. malaccensis]
19 Hb_000522_020 0.2138965406 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
20 Hb_045414_010 0.2144634526 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_002284_040 Hb_002284_040 Hb_010091_040 Hb_010091_040 Hb_002284_040--Hb_010091_040 Hb_000892_040 Hb_000892_040 Hb_002284_040--Hb_000892_040 Hb_080873_010 Hb_080873_010 Hb_002284_040--Hb_080873_010 Hb_007858_030 Hb_007858_030 Hb_002284_040--Hb_007858_030 Hb_052764_010 Hb_052764_010 Hb_002284_040--Hb_052764_010 Hb_000205_220 Hb_000205_220 Hb_002284_040--Hb_000205_220 Hb_010091_040--Hb_052764_010 Hb_010091_040--Hb_000205_220 Hb_010091_040--Hb_007858_030 Hb_000002_280 Hb_000002_280 Hb_010091_040--Hb_000002_280 Hb_042141_010 Hb_042141_010 Hb_010091_040--Hb_042141_010 Hb_000892_040--Hb_080873_010 Hb_000501_180 Hb_000501_180 Hb_000892_040--Hb_000501_180 Hb_002092_140 Hb_002092_140 Hb_000892_040--Hb_002092_140 Hb_007590_040 Hb_007590_040 Hb_000892_040--Hb_007590_040 Hb_166828_010 Hb_166828_010 Hb_000892_040--Hb_166828_010 Hb_080873_010--Hb_002092_140 Hb_080873_010--Hb_166828_010 Hb_080873_010--Hb_000002_280 Hb_080873_010--Hb_000501_180 Hb_007858_030--Hb_000205_220 Hb_000059_160 Hb_000059_160 Hb_007858_030--Hb_000059_160 Hb_007858_030--Hb_052764_010 Hb_091913_010 Hb_091913_010 Hb_007858_030--Hb_091913_010 Hb_052764_010--Hb_000205_220 Hb_052764_010--Hb_042141_010 Hb_063869_010 Hb_063869_010 Hb_052764_010--Hb_063869_010 Hb_000205_220--Hb_063869_010 Hb_000205_220--Hb_042141_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.278094 0.0141748 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0668079

CAGE analysis