Hb_007858_030

Information

Type -
Description -
Location Contig7858: 37061-41650
Sequence    

Annotation

kegg
ID mdm:103431774
description uncharacterized LOC103431774
nr
ID AAX95261.1
description retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID Q53JS3
description Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Oryza sativa subsp. japonica GN=LOC_Os11g26500 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007858_030 0.0 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
2 Hb_000205_220 0.0977270221 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
3 Hb_000059_160 0.1113657457 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
4 Hb_010091_040 0.1357391238 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
5 Hb_052764_010 0.1421453161 - - hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
6 Hb_002284_040 0.1469274292 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_091913_010 0.1793331468 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
8 Hb_006873_030 0.1872254845 - - receptor serine/threonine kinase, putative [Ricinus communis]
9 Hb_063869_010 0.1925603532 - - JHL22C18.10 [Jatropha curcas]
10 Hb_004924_030 0.1937972221 - - -
11 Hb_008897_020 0.2015821916 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Musa acuminata subsp. malaccensis]
12 Hb_039650_030 0.2019853906 - - hypothetical protein RCOM_2128750 [Ricinus communis]
13 Hb_003867_030 0.2238177238 - - -
14 Hb_000175_250 0.2238730292 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
15 Hb_000243_310 0.2325665172 - - lactoylglutathione lyase, putative [Ricinus communis]
16 Hb_164146_010 0.2352191028 - - -
17 Hb_045414_010 0.2374314443 - - unnamed protein product [Vitis vinifera]
18 Hb_003811_030 0.2392043434 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
19 Hb_042141_010 0.2392788484 - - -
20 Hb_005545_080 0.2398009089 - - hypothetical protein JCGZ_01293 [Jatropha curcas]

Gene co-expression network

sample Hb_007858_030 Hb_007858_030 Hb_000205_220 Hb_000205_220 Hb_007858_030--Hb_000205_220 Hb_000059_160 Hb_000059_160 Hb_007858_030--Hb_000059_160 Hb_010091_040 Hb_010091_040 Hb_007858_030--Hb_010091_040 Hb_052764_010 Hb_052764_010 Hb_007858_030--Hb_052764_010 Hb_002284_040 Hb_002284_040 Hb_007858_030--Hb_002284_040 Hb_091913_010 Hb_091913_010 Hb_007858_030--Hb_091913_010 Hb_000205_220--Hb_052764_010 Hb_000205_220--Hb_010091_040 Hb_063869_010 Hb_063869_010 Hb_000205_220--Hb_063869_010 Hb_042141_010 Hb_042141_010 Hb_000205_220--Hb_042141_010 Hb_000205_220--Hb_002284_040 Hb_004924_030 Hb_004924_030 Hb_000059_160--Hb_004924_030 Hb_000059_160--Hb_091913_010 Hb_039650_030 Hb_039650_030 Hb_000059_160--Hb_039650_030 Hb_008897_020 Hb_008897_020 Hb_000059_160--Hb_008897_020 Hb_000175_250 Hb_000175_250 Hb_000059_160--Hb_000175_250 Hb_010091_040--Hb_052764_010 Hb_010091_040--Hb_002284_040 Hb_000002_280 Hb_000002_280 Hb_010091_040--Hb_000002_280 Hb_010091_040--Hb_042141_010 Hb_052764_010--Hb_042141_010 Hb_052764_010--Hb_063869_010 Hb_052764_010--Hb_002284_040 Hb_000892_040 Hb_000892_040 Hb_002284_040--Hb_000892_040 Hb_080873_010 Hb_080873_010 Hb_002284_040--Hb_080873_010 Hb_091913_010--Hb_008897_020 Hb_001677_130 Hb_001677_130 Hb_091913_010--Hb_001677_130 Hb_007328_010 Hb_007328_010 Hb_091913_010--Hb_007328_010 Hb_045414_010 Hb_045414_010 Hb_091913_010--Hb_045414_010 Hb_000117_110 Hb_000117_110 Hb_091913_010--Hb_000117_110 Hb_091913_010--Hb_039650_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0746765 0.0144724 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0184539

CAGE analysis