Hb_006040_080

Information

Type -
Description -
Location Contig6040: 58080-59123
Sequence    

Annotation

kegg
ID rcu:RCOM_1994540
description hypothetical protein
nr
ID XP_002535172.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TAA3
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_1994540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50703: 57136-58460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006040_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011344_150 0.1537362384 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_010091_040 0.2119536824 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
4 Hb_002284_040 0.2216530475 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_052764_010 0.2280792462 - - hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
6 Hb_000002_280 0.2382928493 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
7 Hb_000640_280 0.2396239015 - - Stachyose synthase precursor, putative [Ricinus communis]
8 Hb_000205_220 0.2399772423 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
9 Hb_002092_140 0.2519772602 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
10 Hb_000243_310 0.2529065476 - - lactoylglutathione lyase, putative [Ricinus communis]
11 Hb_080873_010 0.2534072863 - - -
12 Hb_166828_010 0.2549228176 - - -
13 Hb_007858_030 0.2629970798 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
14 Hb_000892_040 0.268953559 - - -
15 Hb_003867_030 0.2743913077 - - -
16 Hb_002571_050 0.2756468627 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
17 Hb_042141_010 0.2768140759 - - -
18 Hb_005833_020 0.2788699803 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
19 Hb_000320_170 0.2796915832 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002836_030 0.2868122477 - - Auxin-induced protein 5NG4, putative [Ricinus communis]

Gene co-expression network

sample Hb_006040_080 Hb_006040_080 Hb_011344_150 Hb_011344_150 Hb_006040_080--Hb_011344_150 Hb_010091_040 Hb_010091_040 Hb_006040_080--Hb_010091_040 Hb_002284_040 Hb_002284_040 Hb_006040_080--Hb_002284_040 Hb_052764_010 Hb_052764_010 Hb_006040_080--Hb_052764_010 Hb_000002_280 Hb_000002_280 Hb_006040_080--Hb_000002_280 Hb_000640_280 Hb_000640_280 Hb_006040_080--Hb_000640_280 Hb_011344_150--Hb_010091_040 Hb_011344_150--Hb_052764_010 Hb_011344_150--Hb_000002_280 Hb_042141_010 Hb_042141_010 Hb_011344_150--Hb_042141_010 Hb_011344_150--Hb_000640_280 Hb_010091_040--Hb_052764_010 Hb_000205_220 Hb_000205_220 Hb_010091_040--Hb_000205_220 Hb_010091_040--Hb_002284_040 Hb_007858_030 Hb_007858_030 Hb_010091_040--Hb_007858_030 Hb_010091_040--Hb_000002_280 Hb_010091_040--Hb_042141_010 Hb_000892_040 Hb_000892_040 Hb_002284_040--Hb_000892_040 Hb_080873_010 Hb_080873_010 Hb_002284_040--Hb_080873_010 Hb_002284_040--Hb_007858_030 Hb_002284_040--Hb_052764_010 Hb_002284_040--Hb_000205_220 Hb_052764_010--Hb_000205_220 Hb_052764_010--Hb_042141_010 Hb_063869_010 Hb_063869_010 Hb_052764_010--Hb_063869_010 Hb_052764_010--Hb_007858_030 Hb_000300_240 Hb_000300_240 Hb_000002_280--Hb_000300_240 Hb_002092_140 Hb_002092_140 Hb_000002_280--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_000002_280--Hb_166828_010 Hb_002571_050 Hb_002571_050 Hb_000002_280--Hb_002571_050 Hb_000002_280--Hb_080873_010 Hb_000640_280--Hb_000002_280 Hb_000243_310 Hb_000243_310 Hb_000640_280--Hb_000243_310 Hb_002890_350 Hb_002890_350 Hb_000640_280--Hb_002890_350 Hb_000640_280--Hb_000300_240 Hb_000392_510 Hb_000392_510 Hb_000640_280--Hb_000392_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05781 26.7716 1.48091 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.43065 0 10.1813

CAGE analysis