Hb_019641_020

Information

Type -
Description -
Location Contig19641: 12197-15579
Sequence    

Annotation

kegg
ID mus:103991997
description uncharacterized protein LOC103991997
nr
ID KFK21865.1
description hypothetical protein AALP_AAs49670U000100, partial [Arabis alpina]
swissprot
ID -
description -
trembl
ID A0A087FW63
description Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs49670U000100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019641_020 0.0 - - hypothetical protein AALP_AAs49670U000100, partial [Arabis alpina]
2 Hb_006274_020 0.1501221679 - - structural constituent of cell wall, putative [Ricinus communis]
3 Hb_044313_010 0.1652641569 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000959_370 0.1665413189 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
5 Hb_006013_030 0.1696179289 - - -
6 Hb_032299_070 0.181350293 - - -
7 Hb_012538_010 0.1816201676 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000832_010 0.1905285808 - - hypothetical protein VITISV_005044 [Vitis vinifera]
9 Hb_006475_020 0.2018050016 - - PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
10 Hb_002733_050 0.2022091629 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_002142_010 0.2041395938 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000363_020 0.2087399392 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_000280_120 0.2139176011 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
14 Hb_110782_010 0.2147126533 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
15 Hb_028872_040 0.2191009496 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_002997_050 0.2224337533 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
17 Hb_114121_010 0.2260572307 - - -
18 Hb_138667_010 0.2275249332 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
19 Hb_020400_010 0.2331577265 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
20 Hb_168909_010 0.2353344202 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]

Gene co-expression network

sample Hb_019641_020 Hb_019641_020 Hb_006274_020 Hb_006274_020 Hb_019641_020--Hb_006274_020 Hb_044313_010 Hb_044313_010 Hb_019641_020--Hb_044313_010 Hb_000959_370 Hb_000959_370 Hb_019641_020--Hb_000959_370 Hb_006013_030 Hb_006013_030 Hb_019641_020--Hb_006013_030 Hb_032299_070 Hb_032299_070 Hb_019641_020--Hb_032299_070 Hb_012538_010 Hb_012538_010 Hb_019641_020--Hb_012538_010 Hb_002733_050 Hb_002733_050 Hb_006274_020--Hb_002733_050 Hb_020400_010 Hb_020400_010 Hb_006274_020--Hb_020400_010 Hb_006274_020--Hb_012538_010 Hb_114121_010 Hb_114121_010 Hb_006274_020--Hb_114121_010 Hb_006274_020--Hb_006013_030 Hb_006475_020 Hb_006475_020 Hb_044313_010--Hb_006475_020 Hb_002142_010 Hb_002142_010 Hb_044313_010--Hb_002142_010 Hb_044313_010--Hb_032299_070 Hb_044313_010--Hb_000959_370 Hb_151694_010 Hb_151694_010 Hb_044313_010--Hb_151694_010 Hb_028872_040 Hb_028872_040 Hb_044313_010--Hb_028872_040 Hb_000959_370--Hb_006013_030 Hb_000959_370--Hb_032299_070 Hb_000959_370--Hb_002733_050 Hb_000600_080 Hb_000600_080 Hb_000959_370--Hb_000600_080 Hb_000280_120 Hb_000280_120 Hb_000959_370--Hb_000280_120 Hb_072173_010 Hb_072173_010 Hb_000959_370--Hb_072173_010 Hb_006013_030--Hb_002733_050 Hb_006013_030--Hb_114121_010 Hb_006013_030--Hb_000280_120 Hb_168909_010 Hb_168909_010 Hb_006013_030--Hb_168909_010 Hb_006013_030--Hb_020400_010 Hb_005618_110 Hb_005618_110 Hb_032299_070--Hb_005618_110 Hb_032299_070--Hb_002142_010 Hb_032299_070--Hb_006013_030 Hb_011242_070 Hb_011242_070 Hb_032299_070--Hb_011242_070 Hb_001021_050 Hb_001021_050 Hb_012538_010--Hb_001021_050 Hb_000832_010 Hb_000832_010 Hb_012538_010--Hb_000832_010 Hb_133047_030 Hb_133047_030 Hb_012538_010--Hb_133047_030 Hb_012538_010--Hb_000280_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0553248 0 0 0 0.00977347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.103407 0.0841385

CAGE analysis