Hb_001310_100

Information

Type transcription factor
Description TF Family: GNAT
Location Contig1310: 131309-133219
Sequence    

Annotation

kegg
ID rcu:RCOM_0578960
description N-acetyltransferase, putative
nr
ID XP_012079388.1
description PREDICTED: probable N-acetyltransferase HLS1 [Jatropha curcas]
swissprot
ID O64815
description Probable N-acetyltransferase HLS1-like OS=Arabidopsis thaliana GN=At2g23060 PE=2 SV=1
trembl
ID A0A067K739
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12522 PE=4 SV=1
Gene Ontology
ID GO:0008080
description probable n-acetyltransferase hls1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09146: 131929-132962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001310_100 0.0 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Jatropha curcas]
2 Hb_007259_020 0.1547487691 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
3 Hb_002475_130 0.1785553562 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
4 Hb_000233_100 0.1880486401 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_000532_130 0.2033425737 - - hypothetical protein [Anabaena sp. PCC 7108]
6 Hb_002232_050 0.2144303342 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
7 Hb_006103_040 0.2246213471 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_006738_060 0.2273820667 - - ATP binding protein, putative [Ricinus communis]
9 Hb_007253_040 0.2304909812 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
10 Hb_060909_010 0.2323814753 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
11 Hb_007618_010 0.2355116792 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
12 Hb_071160_010 0.2374209326 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_004631_130 0.2378785476 - - helicase domain-containing family protein [Populus trichocarpa]
14 Hb_004545_100 0.2398261466 - - PREDICTED: protein BONZAI 3 [Jatropha curcas]
15 Hb_002233_020 0.2414680417 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
16 Hb_025194_010 0.2461748397 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
17 Hb_001921_010 0.2467796588 - - ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_002686_400 0.2490394294 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
19 Hb_001227_040 0.2495458166 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
20 Hb_002739_060 0.2517732856 - - -

Gene co-expression network

sample Hb_001310_100 Hb_001310_100 Hb_007259_020 Hb_007259_020 Hb_001310_100--Hb_007259_020 Hb_002475_130 Hb_002475_130 Hb_001310_100--Hb_002475_130 Hb_000233_100 Hb_000233_100 Hb_001310_100--Hb_000233_100 Hb_000532_130 Hb_000532_130 Hb_001310_100--Hb_000532_130 Hb_002232_050 Hb_002232_050 Hb_001310_100--Hb_002232_050 Hb_006103_040 Hb_006103_040 Hb_001310_100--Hb_006103_040 Hb_007253_040 Hb_007253_040 Hb_007259_020--Hb_007253_040 Hb_007259_020--Hb_002475_130 Hb_007259_020--Hb_000532_130 Hb_060909_010 Hb_060909_010 Hb_007259_020--Hb_060909_010 Hb_001248_110 Hb_001248_110 Hb_007259_020--Hb_001248_110 Hb_001921_010 Hb_001921_010 Hb_002475_130--Hb_001921_010 Hb_002739_070 Hb_002739_070 Hb_002475_130--Hb_002739_070 Hb_002475_130--Hb_002232_050 Hb_002475_130--Hb_000532_130 Hb_002475_130--Hb_000233_100 Hb_000233_100--Hb_060909_010 Hb_001408_150 Hb_001408_150 Hb_000233_100--Hb_001408_150 Hb_036568_010 Hb_036568_010 Hb_000233_100--Hb_036568_010 Hb_057079_020 Hb_057079_020 Hb_000233_100--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_000233_100--Hb_001410_010 Hb_002739_060 Hb_002739_060 Hb_000532_130--Hb_002739_060 Hb_000532_130--Hb_007253_040 Hb_008175_030 Hb_008175_030 Hb_000532_130--Hb_008175_030 Hb_000532_130--Hb_001408_150 Hb_002609_150 Hb_002609_150 Hb_000532_130--Hb_002609_150 Hb_000532_130--Hb_060909_010 Hb_002232_050--Hb_001921_010 Hb_001227_040 Hb_001227_040 Hb_002232_050--Hb_001227_040 Hb_006718_040 Hb_006718_040 Hb_002232_050--Hb_006718_040 Hb_000333_120 Hb_000333_120 Hb_002232_050--Hb_000333_120 Hb_001946_060 Hb_001946_060 Hb_002232_050--Hb_001946_060 Hb_133047_030 Hb_133047_030 Hb_006103_040--Hb_133047_030 Hb_004687_010 Hb_004687_010 Hb_006103_040--Hb_004687_010 Hb_000574_140 Hb_000574_140 Hb_006103_040--Hb_000574_140 Hb_071160_010 Hb_071160_010 Hb_006103_040--Hb_071160_010 Hb_132317_010 Hb_132317_010 Hb_006103_040--Hb_132317_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36957 16.3015 0.406002 1.13953 1.68254 3.18249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.99466 4.17677

CAGE analysis