Hb_002232_050

Information

Type -
Description -
Location Contig2232: 20353-22711
Sequence    

Annotation

kegg
ID sot:102604101
description uncharacterized LOC102604101
nr
ID XP_009762955.1
description PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A5BIY7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025425 PE=4 SV=1
Gene Ontology
ID GO:0003824
description ac051624_3 retroelement

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23106: 21813-22201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_050 0.0 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
2 Hb_002475_130 0.1502962947 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
3 Hb_001921_010 0.1550977749 - - ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_001227_040 0.1653733427 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
5 Hb_006718_040 0.171244015 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
6 Hb_000333_120 0.171294968 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
7 Hb_001946_060 0.1808145503 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
8 Hb_015882_020 0.1901180937 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
9 Hb_008195_020 0.197067507 - - Vacuolar-processing enzyme precursor [Ricinus communis]
10 Hb_011344_140 0.2010628156 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
11 Hb_004030_070 0.2016275495 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
12 Hb_002045_220 0.2022765596 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
13 Hb_000808_220 0.2023446248 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
14 Hb_011174_100 0.2037759728 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_007709_010 0.2058651673 - - -
16 Hb_001907_020 0.2085091592 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
17 Hb_000233_100 0.209370371 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_002218_070 0.2140253575 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
19 Hb_001310_100 0.2144303342 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Jatropha curcas]
20 Hb_071160_010 0.215110766 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_002232_050 Hb_002232_050 Hb_002475_130 Hb_002475_130 Hb_002232_050--Hb_002475_130 Hb_001921_010 Hb_001921_010 Hb_002232_050--Hb_001921_010 Hb_001227_040 Hb_001227_040 Hb_002232_050--Hb_001227_040 Hb_006718_040 Hb_006718_040 Hb_002232_050--Hb_006718_040 Hb_000333_120 Hb_000333_120 Hb_002232_050--Hb_000333_120 Hb_001946_060 Hb_001946_060 Hb_002232_050--Hb_001946_060 Hb_002475_130--Hb_001921_010 Hb_002739_070 Hb_002739_070 Hb_002475_130--Hb_002739_070 Hb_007259_020 Hb_007259_020 Hb_002475_130--Hb_007259_020 Hb_000532_130 Hb_000532_130 Hb_002475_130--Hb_000532_130 Hb_000233_100 Hb_000233_100 Hb_002475_130--Hb_000233_100 Hb_010080_020 Hb_010080_020 Hb_001921_010--Hb_010080_020 Hb_002218_070 Hb_002218_070 Hb_001921_010--Hb_002218_070 Hb_008175_030 Hb_008175_030 Hb_001921_010--Hb_008175_030 Hb_000819_010 Hb_000819_010 Hb_001921_010--Hb_000819_010 Hb_001921_010--Hb_000333_120 Hb_001227_040--Hb_000333_120 Hb_008195_020 Hb_008195_020 Hb_001227_040--Hb_008195_020 Hb_000465_380 Hb_000465_380 Hb_001227_040--Hb_000465_380 Hb_108055_010 Hb_108055_010 Hb_001227_040--Hb_108055_010 Hb_129399_010 Hb_129399_010 Hb_001227_040--Hb_129399_010 Hb_003106_210 Hb_003106_210 Hb_006718_040--Hb_003106_210 Hb_000067_030 Hb_000067_030 Hb_006718_040--Hb_000067_030 Hb_002518_270 Hb_002518_270 Hb_006718_040--Hb_002518_270 Hb_011174_100 Hb_011174_100 Hb_006718_040--Hb_011174_100 Hb_006501_170 Hb_006501_170 Hb_006718_040--Hb_006501_170 Hb_006718_040--Hb_002218_070 Hb_000333_120--Hb_108055_010 Hb_000705_130 Hb_000705_130 Hb_000333_120--Hb_000705_130 Hb_015882_020 Hb_015882_020 Hb_000333_120--Hb_015882_020 Hb_000333_120--Hb_000465_380 Hb_010962_030 Hb_010962_030 Hb_000333_120--Hb_010962_030 Hb_010921_060 Hb_010921_060 Hb_000333_120--Hb_010921_060 Hb_000163_250 Hb_000163_250 Hb_001946_060--Hb_000163_250 Hb_001085_230 Hb_001085_230 Hb_001946_060--Hb_001085_230 Hb_007919_030 Hb_007919_030 Hb_001946_060--Hb_007919_030 Hb_000037_010 Hb_000037_010 Hb_001946_060--Hb_000037_010 Hb_000808_220 Hb_000808_220 Hb_001946_060--Hb_000808_220 Hb_001946_060--Hb_002518_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0280155 2.19873 0.274276 0.128978 0.19193 0.0986766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.779239 0.825044

CAGE analysis