Hb_000163_250

Information

Type -
Description -
Location Contig163: 162932-177117
Sequence    

Annotation

kegg
ID rcu:RCOM_1177950
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID CBI36856.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q60DX8
description Beta-glucosidase 22 OS=Oryza sativa subsp. japonica GN=BGLU22 PE=2 SV=1
trembl
ID F6HZ47
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g00410 PE=3 SV=1
Gene Ontology
ID GO:0008422
description beta-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14837: 163349-165589 , PASA_asmbl_14839: 166257-167044 , PASA_asmbl_14840: 169515-172606 , PASA_asmbl_14841: 170847-172266 , PASA_asmbl_14842: 173925-177090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_250 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_007919_030 0.0862271405 - - -
3 Hb_000008_080 0.0956300045 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008783_020 0.1057217881 - - hypothetical protein JCGZ_21284 [Jatropha curcas]
5 Hb_000037_010 0.1061848052 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
6 Hb_005276_220 0.1088272974 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
7 Hb_006788_100 0.1113850629 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
8 Hb_000403_110 0.1119238011 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
9 Hb_107809_010 0.1149323631 - - JHL06P13.14 [Jatropha curcas]
10 Hb_001946_060 0.1163951437 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
11 Hb_001894_040 0.1177019655 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
12 Hb_001085_230 0.1179898322 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
13 Hb_032717_010 0.119011176 - - unnamed protein product [Vitis vinifera]
14 Hb_001636_010 0.1236286638 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
15 Hb_001421_010 0.1252741281 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
16 Hb_000359_280 0.1259818314 - - hypothetical protein OsI_15300 [Oryza sativa Indica Group]
17 Hb_000108_090 0.1265942784 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
18 Hb_001102_270 0.1275533968 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
19 Hb_001634_080 0.128137942 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_011472_020 0.1290139464 - - PREDICTED: mucin-17-like [Jatropha curcas]

Gene co-expression network

sample Hb_000163_250 Hb_000163_250 Hb_007919_030 Hb_007919_030 Hb_000163_250--Hb_007919_030 Hb_000008_080 Hb_000008_080 Hb_000163_250--Hb_000008_080 Hb_008783_020 Hb_008783_020 Hb_000163_250--Hb_008783_020 Hb_000037_010 Hb_000037_010 Hb_000163_250--Hb_000037_010 Hb_005276_220 Hb_005276_220 Hb_000163_250--Hb_005276_220 Hb_006788_100 Hb_006788_100 Hb_000163_250--Hb_006788_100 Hb_001675_130 Hb_001675_130 Hb_007919_030--Hb_001675_130 Hb_001085_230 Hb_001085_230 Hb_007919_030--Hb_001085_230 Hb_001946_060 Hb_001946_060 Hb_007919_030--Hb_001946_060 Hb_002217_200 Hb_002217_200 Hb_007919_030--Hb_002217_200 Hb_001819_010 Hb_001819_010 Hb_007919_030--Hb_001819_010 Hb_001894_040 Hb_001894_040 Hb_000008_080--Hb_001894_040 Hb_000359_280 Hb_000359_280 Hb_000008_080--Hb_000359_280 Hb_001636_010 Hb_001636_010 Hb_000008_080--Hb_001636_010 Hb_001102_270 Hb_001102_270 Hb_000008_080--Hb_001102_270 Hb_000085_230 Hb_000085_230 Hb_000008_080--Hb_000085_230 Hb_000403_110 Hb_000403_110 Hb_008783_020--Hb_000403_110 Hb_107809_010 Hb_107809_010 Hb_008783_020--Hb_107809_010 Hb_008783_020--Hb_005276_220 Hb_008783_020--Hb_001102_270 Hb_001421_010 Hb_001421_010 Hb_008783_020--Hb_001421_010 Hb_175758_010 Hb_175758_010 Hb_008783_020--Hb_175758_010 Hb_000037_010--Hb_001085_230 Hb_009803_030 Hb_009803_030 Hb_000037_010--Hb_009803_030 Hb_046101_010 Hb_046101_010 Hb_000037_010--Hb_046101_010 Hb_114310_050 Hb_114310_050 Hb_000037_010--Hb_114310_050 Hb_023344_130 Hb_023344_130 Hb_000037_010--Hb_023344_130 Hb_011472_020 Hb_011472_020 Hb_005276_220--Hb_011472_020 Hb_005276_220--Hb_000403_110 Hb_001318_120 Hb_001318_120 Hb_005276_220--Hb_001318_120 Hb_005542_040 Hb_005542_040 Hb_005276_220--Hb_005542_040 Hb_005276_220--Hb_175758_010 Hb_010519_020 Hb_010519_020 Hb_005276_220--Hb_010519_020 Hb_006788_100--Hb_001819_010 Hb_006788_100--Hb_023344_130 Hb_032717_010 Hb_032717_010 Hb_006788_100--Hb_032717_010 Hb_006788_100--Hb_005276_220 Hb_000840_050 Hb_000840_050 Hb_006788_100--Hb_000840_050 Hb_010417_100 Hb_010417_100 Hb_006788_100--Hb_010417_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.111129 15.2031 8.23457 4.94376 0.486827 0.150408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0770821 0.0303311 0.0145824 16.8651 7.19257

CAGE analysis