Hb_002835_060

Information

Type -
Description -
Location Contig2835: 52367-55819
Sequence    

Annotation

kegg
ID rcu:RCOM_1508450
description hypothetical protein
nr
ID XP_012079965.1
description PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
swissprot
ID Q8BIW1
description Protein prune homolog OS=Mus musculus GN=Prune PE=2 SV=1
trembl
ID B9RAT2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1508450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_060 0.0 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
2 Hb_000346_080 0.2069117165 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
3 Hb_071160_010 0.2205789506 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_004767_060 0.2615265866 - - PREDICTED: uncharacterized protein LOC105761928 [Gossypium raimondii]
5 Hb_002232_050 0.2711061424 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
6 Hb_022108_010 0.2716793145 - - G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Glycine soja]
7 Hb_000808_220 0.2724128839 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
8 Hb_133047_030 0.2730514336 - - nuclear acid binding protein, putative [Ricinus communis]
9 Hb_003649_030 0.2737821226 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
10 Hb_008195_020 0.2760633617 - - Vacuolar-processing enzyme precursor [Ricinus communis]
11 Hb_000631_140 0.2848449637 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
12 Hb_010261_030 0.2856317165 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_000866_390 0.2892011833 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
14 Hb_004713_050 0.289916048 - - RecName: Full=Beta-amyrin synthase [Betula platyphylla]
15 Hb_000061_110 0.2901749592 - - -
16 Hb_003097_050 0.2920139538 - - hypothetical protein POPTR_0007s07150g [Populus trichocarpa]
17 Hb_000059_080 0.2953009365 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
18 Hb_056506_010 0.2990030204 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
19 Hb_132317_010 0.301659163 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_001008_020 0.3017705593 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002835_060 Hb_002835_060 Hb_000346_080 Hb_000346_080 Hb_002835_060--Hb_000346_080 Hb_071160_010 Hb_071160_010 Hb_002835_060--Hb_071160_010 Hb_004767_060 Hb_004767_060 Hb_002835_060--Hb_004767_060 Hb_002232_050 Hb_002232_050 Hb_002835_060--Hb_002232_050 Hb_022108_010 Hb_022108_010 Hb_002835_060--Hb_022108_010 Hb_000808_220 Hb_000808_220 Hb_002835_060--Hb_000808_220 Hb_133047_030 Hb_133047_030 Hb_000346_080--Hb_133047_030 Hb_000612_050 Hb_000612_050 Hb_000346_080--Hb_000612_050 Hb_132317_010 Hb_132317_010 Hb_000346_080--Hb_132317_010 Hb_000243_050 Hb_000243_050 Hb_000346_080--Hb_000243_050 Hb_003938_100 Hb_003938_100 Hb_000346_080--Hb_003938_100 Hb_001485_010 Hb_001485_010 Hb_071160_010--Hb_001485_010 Hb_000233_100 Hb_000233_100 Hb_071160_010--Hb_000233_100 Hb_001091_020 Hb_001091_020 Hb_071160_010--Hb_001091_020 Hb_010261_030 Hb_010261_030 Hb_071160_010--Hb_010261_030 Hb_007709_010 Hb_007709_010 Hb_071160_010--Hb_007709_010 Hb_002218_070 Hb_002218_070 Hb_071160_010--Hb_002218_070 Hb_004007_230 Hb_004007_230 Hb_004767_060--Hb_004007_230 Hb_000417_150 Hb_000417_150 Hb_004767_060--Hb_000417_150 Hb_002609_130 Hb_002609_130 Hb_004767_060--Hb_002609_130 Hb_001357_360 Hb_001357_360 Hb_004767_060--Hb_001357_360 Hb_005306_020 Hb_005306_020 Hb_004767_060--Hb_005306_020 Hb_061350_010 Hb_061350_010 Hb_004767_060--Hb_061350_010 Hb_002475_130 Hb_002475_130 Hb_002232_050--Hb_002475_130 Hb_001921_010 Hb_001921_010 Hb_002232_050--Hb_001921_010 Hb_001227_040 Hb_001227_040 Hb_002232_050--Hb_001227_040 Hb_006718_040 Hb_006718_040 Hb_002232_050--Hb_006718_040 Hb_000333_120 Hb_000333_120 Hb_002232_050--Hb_000333_120 Hb_001946_060 Hb_001946_060 Hb_002232_050--Hb_001946_060 Hb_004055_100 Hb_004055_100 Hb_022108_010--Hb_004055_100 Hb_001907_020 Hb_001907_020 Hb_022108_010--Hb_001907_020 Hb_005542_110 Hb_005542_110 Hb_022108_010--Hb_005542_110 Hb_000684_010 Hb_000684_010 Hb_022108_010--Hb_000684_010 Hb_000120_980 Hb_000120_980 Hb_022108_010--Hb_000120_980 Hb_003469_010 Hb_003469_010 Hb_022108_010--Hb_003469_010 Hb_001085_230 Hb_001085_230 Hb_000808_220--Hb_001085_230 Hb_109489_010 Hb_109489_010 Hb_000808_220--Hb_109489_010 Hb_000808_220--Hb_001946_060 Hb_001675_130 Hb_001675_130 Hb_000808_220--Hb_001675_130 Hb_007919_030 Hb_007919_030 Hb_000808_220--Hb_007919_030 Hb_000377_160 Hb_000377_160 Hb_000808_220--Hb_000377_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0575632 0 0.0081576 0.0197592 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0300573 0.0398281

CAGE analysis