Hb_105581_010

Information

Type -
Description -
Location Contig105581: 128-2771
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_042943005.1
description hypothetical protein, partial [Pseudomonas fluorescens]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105581_010 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
2 Hb_000463_030 0.2202948863 - - -
3 Hb_000089_050 0.229804977 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_004687_010 0.2675735781 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_012184_030 0.27664177 - - -
6 Hb_148593_010 0.2777246816 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
7 Hb_017604_030 0.2846388813 - - -
8 Hb_002249_210 0.28873078 - - -
9 Hb_001488_260 0.290628751 - - Alpha-2-macroglobulin [Gossypium arboreum]
10 Hb_011574_010 0.3033100921 - - -
11 Hb_017225_010 0.3051535551 - - PREDICTED: nodulation receptor kinase-like [Jatropha curcas]
12 Hb_003038_150 0.3060439507 - - -
13 Hb_008727_130 0.3063187216 - - hypothetical protein EUGRSUZ_J01958 [Eucalyptus grandis]
14 Hb_001031_050 0.3063801661 - - -
15 Hb_008123_010 0.3077423054 - - -
16 Hb_012305_090 0.3096909321 - - hypothetical protein VITISV_018166 [Vitis vinifera]
17 Hb_001241_050 0.3111567699 - - PREDICTED: uncharacterized protein LOC104880586 isoform X1 [Vitis vinifera]
18 Hb_013420_040 0.3124752073 - - unnamed protein product [Vitis vinifera]
19 Hb_004241_030 0.3137713036 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000703_300 0.3148283395 - - -

Gene co-expression network

sample Hb_105581_010 Hb_105581_010 Hb_000463_030 Hb_000463_030 Hb_105581_010--Hb_000463_030 Hb_000089_050 Hb_000089_050 Hb_105581_010--Hb_000089_050 Hb_004687_010 Hb_004687_010 Hb_105581_010--Hb_004687_010 Hb_012184_030 Hb_012184_030 Hb_105581_010--Hb_012184_030 Hb_148593_010 Hb_148593_010 Hb_105581_010--Hb_148593_010 Hb_017604_030 Hb_017604_030 Hb_105581_010--Hb_017604_030 Hb_001488_260 Hb_001488_260 Hb_000463_030--Hb_001488_260 Hb_001417_020 Hb_001417_020 Hb_000463_030--Hb_001417_020 Hb_008123_010 Hb_008123_010 Hb_000463_030--Hb_008123_010 Hb_154141_010 Hb_154141_010 Hb_000463_030--Hb_154141_010 Hb_000463_030--Hb_004687_010 Hb_015076_020 Hb_015076_020 Hb_000089_050--Hb_015076_020 Hb_008783_010 Hb_008783_010 Hb_000089_050--Hb_008783_010 Hb_009152_030 Hb_009152_030 Hb_000089_050--Hb_009152_030 Hb_031866_030 Hb_031866_030 Hb_000089_050--Hb_031866_030 Hb_002060_040 Hb_002060_040 Hb_000089_050--Hb_002060_040 Hb_000574_140 Hb_000574_140 Hb_004687_010--Hb_000574_140 Hb_004241_030 Hb_004241_030 Hb_004687_010--Hb_004241_030 Hb_001241_050 Hb_001241_050 Hb_004687_010--Hb_001241_050 Hb_006103_040 Hb_006103_040 Hb_004687_010--Hb_006103_040 Hb_004687_010--Hb_008783_010 Hb_012184_030--Hb_004241_030 Hb_000752_080 Hb_000752_080 Hb_012184_030--Hb_000752_080 Hb_000085_030 Hb_000085_030 Hb_012184_030--Hb_000085_030 Hb_012184_030--Hb_017604_030 Hb_007040_010 Hb_007040_010 Hb_012184_030--Hb_007040_010 Hb_012184_030--Hb_004687_010 Hb_003805_070 Hb_003805_070 Hb_148593_010--Hb_003805_070 Hb_006452_240 Hb_006452_240 Hb_148593_010--Hb_006452_240 Hb_001341_020 Hb_001341_020 Hb_148593_010--Hb_001341_020 Hb_000236_450 Hb_000236_450 Hb_148593_010--Hb_000236_450 Hb_011616_020 Hb_011616_020 Hb_148593_010--Hb_011616_020 Hb_005523_010 Hb_005523_010 Hb_148593_010--Hb_005523_010 Hb_017604_030--Hb_000752_080 Hb_017604_030--Hb_031866_030 Hb_017604_030--Hb_002060_040 Hb_017604_030--Hb_009152_030 Hb_033066_030 Hb_033066_030 Hb_017604_030--Hb_033066_030 Hb_000009_010 Hb_000009_010 Hb_017604_030--Hb_000009_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0547901 0.02925 0 0 0.0422098 0.0535076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0946544 0.329592

CAGE analysis