Hb_000085_030

Information

Type -
Description -
Location Contig85: 19718-22050
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_030 0.0 - - -
2 Hb_000140_430 0.0737580181 - - -
3 Hb_012184_030 0.2553531817 - - -
4 Hb_002637_020 0.2615124702 - - -
5 Hb_002520_010 0.3054366822 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
6 Hb_000671_140 0.3064962628 - - hypothetical protein VITISV_003767 [Vitis vinifera]
7 Hb_001160_010 0.3085456378 - - -
8 Hb_002249_210 0.3150309643 - - -
9 Hb_005451_020 0.3203686583 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
10 Hb_004687_010 0.324545974 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_087426_010 0.3289123278 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
12 Hb_001417_020 0.3358085896 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
13 Hb_056550_010 0.3358430979 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
14 Hb_000351_150 0.3384774697 - - Wall-associated kinase 2, putative [Theobroma cacao]
15 Hb_005356_060 0.349149242 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
16 Hb_040290_010 0.3506982992 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_000709_020 0.3544774931 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_023675_030 0.3594701265 - - -
19 Hb_173121_010 0.3597420347 - - -
20 Hb_004361_020 0.3615747598 - - PREDICTED: uncharacterized protein LOC102625775 [Citrus sinensis]

Gene co-expression network

sample Hb_000085_030 Hb_000085_030 Hb_000140_430 Hb_000140_430 Hb_000085_030--Hb_000140_430 Hb_012184_030 Hb_012184_030 Hb_000085_030--Hb_012184_030 Hb_002637_020 Hb_002637_020 Hb_000085_030--Hb_002637_020 Hb_002520_010 Hb_002520_010 Hb_000085_030--Hb_002520_010 Hb_000671_140 Hb_000671_140 Hb_000085_030--Hb_000671_140 Hb_001160_010 Hb_001160_010 Hb_000085_030--Hb_001160_010 Hb_000140_430--Hb_001160_010 Hb_000140_430--Hb_002637_020 Hb_000140_430--Hb_012184_030 Hb_000140_430--Hb_000671_140 Hb_005451_020 Hb_005451_020 Hb_000140_430--Hb_005451_020 Hb_004241_030 Hb_004241_030 Hb_012184_030--Hb_004241_030 Hb_000752_080 Hb_000752_080 Hb_012184_030--Hb_000752_080 Hb_017604_030 Hb_017604_030 Hb_012184_030--Hb_017604_030 Hb_007040_010 Hb_007040_010 Hb_012184_030--Hb_007040_010 Hb_004687_010 Hb_004687_010 Hb_012184_030--Hb_004687_010 Hb_000078_170 Hb_000078_170 Hb_002637_020--Hb_000078_170 Hb_002311_230 Hb_002311_230 Hb_002637_020--Hb_002311_230 Hb_000330_080 Hb_000330_080 Hb_002637_020--Hb_000330_080 Hb_001773_010 Hb_001773_010 Hb_002637_020--Hb_001773_010 Hb_083663_010 Hb_083663_010 Hb_002520_010--Hb_083663_010 Hb_015778_020 Hb_015778_020 Hb_002520_010--Hb_015778_020 Hb_010452_010 Hb_010452_010 Hb_002520_010--Hb_010452_010 Hb_002520_010--Hb_000671_140 Hb_002520_010--Hb_000140_430 Hb_005401_010 Hb_005401_010 Hb_000671_140--Hb_005401_010 Hb_001769_130 Hb_001769_130 Hb_000671_140--Hb_001769_130 Hb_044086_010 Hb_044086_010 Hb_000671_140--Hb_044086_010 Hb_000840_170 Hb_000840_170 Hb_000671_140--Hb_000840_170 Hb_006573_010 Hb_006573_010 Hb_000671_140--Hb_006573_010 Hb_001160_010--Hb_005451_020 Hb_005356_060 Hb_005356_060 Hb_001160_010--Hb_005356_060 Hb_000101_280 Hb_000101_280 Hb_001160_010--Hb_000101_280 Hb_153142_010 Hb_153142_010 Hb_001160_010--Hb_153142_010 Hb_021068_010 Hb_021068_010 Hb_001160_010--Hb_021068_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0846781 0.0282639 0 0 0.0337614 0.0431465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.120976

CAGE analysis