Hb_005401_010

Information

Type -
Description -
Location Contig5401: 4218-10253
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005401_010 0.0 - - -
2 Hb_006043_030 0.1536890053 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_001769_130 0.2104233081 - - -
4 Hb_117001_010 0.2137239078 - - -
5 Hb_003527_020 0.2215048793 - - BnaC01g27150D [Brassica napus]
6 Hb_000671_140 0.2216872377 - - hypothetical protein VITISV_003767 [Vitis vinifera]
7 Hb_042463_050 0.2243540327 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004884_210 0.2389387929 - - PREDICTED: mitoferrin-like [Jatropha curcas]
9 Hb_003106_250 0.2479506922 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
10 Hb_001205_170 0.2493218986 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
11 Hb_027337_050 0.2617451446 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_011344_150 0.2670400569 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_000812_030 0.2678323921 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_000640_280 0.2693043637 - - Stachyose synthase precursor, putative [Ricinus communis]
15 Hb_003992_200 0.2704227652 - - -
16 Hb_007507_030 0.2704564809 - - polyprotein [Citrus endogenous pararetrovirus]
17 Hb_000518_040 0.2709352238 - - -
18 Hb_042141_010 0.274247223 - - -
19 Hb_101778_010 0.2749353431 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002154_080 0.2813699543 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]

Gene co-expression network

sample Hb_005401_010 Hb_005401_010 Hb_006043_030 Hb_006043_030 Hb_005401_010--Hb_006043_030 Hb_001769_130 Hb_001769_130 Hb_005401_010--Hb_001769_130 Hb_117001_010 Hb_117001_010 Hb_005401_010--Hb_117001_010 Hb_003527_020 Hb_003527_020 Hb_005401_010--Hb_003527_020 Hb_000671_140 Hb_000671_140 Hb_005401_010--Hb_000671_140 Hb_042463_050 Hb_042463_050 Hb_005401_010--Hb_042463_050 Hb_001205_170 Hb_001205_170 Hb_006043_030--Hb_001205_170 Hb_003106_250 Hb_003106_250 Hb_006043_030--Hb_003106_250 Hb_007507_030 Hb_007507_030 Hb_006043_030--Hb_007507_030 Hb_101778_010 Hb_101778_010 Hb_006043_030--Hb_101778_010 Hb_006043_030--Hb_003527_020 Hb_044086_010 Hb_044086_010 Hb_001769_130--Hb_044086_010 Hb_000812_030 Hb_000812_030 Hb_001769_130--Hb_000812_030 Hb_001769_130--Hb_000671_140 Hb_004545_100 Hb_004545_100 Hb_001769_130--Hb_004545_100 Hb_004074_030 Hb_004074_030 Hb_001769_130--Hb_004074_030 Hb_144027_010 Hb_144027_010 Hb_117001_010--Hb_144027_010 Hb_000518_040 Hb_000518_040 Hb_117001_010--Hb_000518_040 Hb_045785_010 Hb_045785_010 Hb_117001_010--Hb_045785_010 Hb_004899_210 Hb_004899_210 Hb_117001_010--Hb_004899_210 Hb_007575_020 Hb_007575_020 Hb_117001_010--Hb_007575_020 Hb_104735_020 Hb_104735_020 Hb_117001_010--Hb_104735_020 Hb_000959_050 Hb_000959_050 Hb_003527_020--Hb_000959_050 Hb_000060_130 Hb_000060_130 Hb_003527_020--Hb_000060_130 Hb_062503_010 Hb_062503_010 Hb_003527_020--Hb_062503_010 Hb_005183_060 Hb_005183_060 Hb_003527_020--Hb_005183_060 Hb_003527_020--Hb_045785_010 Hb_000671_140--Hb_044086_010 Hb_000840_170 Hb_000840_170 Hb_000671_140--Hb_000840_170 Hb_006573_010 Hb_006573_010 Hb_000671_140--Hb_006573_010 Hb_000140_430 Hb_000140_430 Hb_000671_140--Hb_000140_430 Hb_004884_210 Hb_004884_210 Hb_042463_050--Hb_004884_210 Hb_024468_040 Hb_024468_040 Hb_042463_050--Hb_024468_040 Hb_172426_010 Hb_172426_010 Hb_042463_050--Hb_172426_010 Hb_004372_050 Hb_004372_050 Hb_042463_050--Hb_004372_050 Hb_001999_050 Hb_001999_050 Hb_042463_050--Hb_001999_050 Hb_002030_050 Hb_002030_050 Hb_042463_050--Hb_002030_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0998922 0.898902 0.140537 0 0.0886114 0.105243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.032969 1.08704

CAGE analysis