Hb_004545_100

Information

Type -
Description -
Location Contig4545: 145437-154935
Sequence    

Annotation

kegg
ID rcu:RCOM_1429710
description copine, putative
nr
ID XP_012074082.1
description PREDICTED: protein BONZAI 3 [Jatropha curcas]
swissprot
ID Q5XQC7
description Protein BONZAI 3 OS=Arabidopsis thaliana GN=BON3 PE=1 SV=1
trembl
ID B9REY5
description Copine, putative OS=Ricinus communis GN=RCOM_1429710 PE=4 SV=1
Gene Ontology
ID GO:0060548
description protein bonzai 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_100 0.0 - - PREDICTED: protein BONZAI 3 [Jatropha curcas]
2 Hb_002475_130 0.1955616854 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
3 Hb_008864_080 0.2101622719 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
4 Hb_007259_020 0.2164097607 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
5 Hb_002793_060 0.2215741523 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
6 Hb_011885_010 0.2265715382 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_033642_070 0.228171855 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
8 Hb_012760_180 0.2301873911 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
9 Hb_007747_120 0.2348817004 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012018_010 0.2383859505 - - hypothetical protein MIMGU_mgv1a0024251mg, partial [Erythranthe guttata]
11 Hb_001310_100 0.2398261466 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Jatropha curcas]
12 Hb_002375_050 0.2401505301 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
13 Hb_004724_130 0.2430599111 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
14 Hb_009897_020 0.2437026609 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
15 Hb_001769_130 0.2458241461 - - -
16 Hb_177020_010 0.2504227944 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
17 Hb_004800_190 0.2510443143 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
18 Hb_162074_010 0.2520616226 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
19 Hb_004570_040 0.2521153372 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_004631_130 0.252134309 - - helicase domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_004545_100 Hb_004545_100 Hb_002475_130 Hb_002475_130 Hb_004545_100--Hb_002475_130 Hb_008864_080 Hb_008864_080 Hb_004545_100--Hb_008864_080 Hb_007259_020 Hb_007259_020 Hb_004545_100--Hb_007259_020 Hb_002793_060 Hb_002793_060 Hb_004545_100--Hb_002793_060 Hb_011885_010 Hb_011885_010 Hb_004545_100--Hb_011885_010 Hb_033642_070 Hb_033642_070 Hb_004545_100--Hb_033642_070 Hb_001921_010 Hb_001921_010 Hb_002475_130--Hb_001921_010 Hb_002739_070 Hb_002739_070 Hb_002475_130--Hb_002739_070 Hb_002475_130--Hb_007259_020 Hb_002232_050 Hb_002232_050 Hb_002475_130--Hb_002232_050 Hb_000532_130 Hb_000532_130 Hb_002475_130--Hb_000532_130 Hb_000233_100 Hb_000233_100 Hb_002475_130--Hb_000233_100 Hb_000165_220 Hb_000165_220 Hb_008864_080--Hb_000165_220 Hb_007747_120 Hb_007747_120 Hb_008864_080--Hb_007747_120 Hb_005833_020 Hb_005833_020 Hb_008864_080--Hb_005833_020 Hb_001345_030 Hb_001345_030 Hb_008864_080--Hb_001345_030 Hb_077995_010 Hb_077995_010 Hb_008864_080--Hb_077995_010 Hb_009247_020 Hb_009247_020 Hb_008864_080--Hb_009247_020 Hb_007253_040 Hb_007253_040 Hb_007259_020--Hb_007253_040 Hb_007259_020--Hb_000532_130 Hb_001310_100 Hb_001310_100 Hb_007259_020--Hb_001310_100 Hb_060909_010 Hb_060909_010 Hb_007259_020--Hb_060909_010 Hb_001248_110 Hb_001248_110 Hb_007259_020--Hb_001248_110 Hb_001489_120 Hb_001489_120 Hb_002793_060--Hb_001489_120 Hb_004032_310 Hb_004032_310 Hb_002793_060--Hb_004032_310 Hb_001662_170 Hb_001662_170 Hb_002793_060--Hb_001662_170 Hb_002534_050 Hb_002534_050 Hb_002793_060--Hb_002534_050 Hb_000071_140 Hb_000071_140 Hb_002793_060--Hb_000071_140 Hb_002774_150 Hb_002774_150 Hb_002793_060--Hb_002774_150 Hb_009897_020 Hb_009897_020 Hb_011885_010--Hb_009897_020 Hb_162074_010 Hb_162074_010 Hb_011885_010--Hb_162074_010 Hb_000488_020 Hb_000488_020 Hb_011885_010--Hb_000488_020 Hb_004800_190 Hb_004800_190 Hb_011885_010--Hb_004800_190 Hb_000225_050 Hb_000225_050 Hb_011885_010--Hb_000225_050 Hb_001514_060 Hb_001514_060 Hb_011885_010--Hb_001514_060 Hb_003126_020 Hb_003126_020 Hb_033642_070--Hb_003126_020 Hb_158696_010 Hb_158696_010 Hb_033642_070--Hb_158696_010 Hb_001863_450 Hb_001863_450 Hb_033642_070--Hb_001863_450 Hb_033642_070--Hb_001662_170 Hb_056012_010 Hb_056012_010 Hb_033642_070--Hb_056012_010 Hb_004466_070 Hb_004466_070 Hb_033642_070--Hb_004466_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.531658 2.80604 0.446345 0.0509861 0.257615 0.20589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0198239 0 0.521051 0.375894

CAGE analysis