Hb_007747_120

Information

Type -
Description -
Location Contig7747: 97458-101715
Sequence    

Annotation

kegg
ID rcu:RCOM_1258780
description hypothetical protein
nr
ID XP_002530524.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CAX1
description Protein trichome birefringence-like 8 OS=Arabidopsis thaliana GN=TBL8 PE=2 SV=1
trembl
ID B9SX05
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1258780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008864_080 0.1390408587 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
3 Hb_005833_020 0.163241156 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
4 Hb_000700_100 0.1748468548 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
5 Hb_001504_270 0.1811824868 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
6 Hb_008253_040 0.1953843711 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
7 Hb_000165_220 0.1957717615 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]
8 Hb_006052_050 0.2020984757 - - hypothetical protein EUGRSUZ_A00568 [Eucalyptus grandis]
9 Hb_001863_450 0.2055901876 - - cryptochrome 1.2 [Populus tremula]
10 Hb_006911_060 0.2082227925 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]
11 Hb_001345_030 0.2103921221 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
12 Hb_000333_120 0.2120822186 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
13 Hb_003086_050 0.2173052398 - - calcium-dependent protein kinase, putative [Ricinus communis]
14 Hb_004030_070 0.2194245938 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
15 Hb_004570_040 0.2200358043 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_009247_020 0.2233697086 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
17 Hb_003375_080 0.224384817 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
18 Hb_138575_010 0.2251165624 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
19 Hb_000061_100 0.2257042318 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
20 Hb_001248_110 0.2263119776 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_007747_120 Hb_007747_120 Hb_008864_080 Hb_008864_080 Hb_007747_120--Hb_008864_080 Hb_005833_020 Hb_005833_020 Hb_007747_120--Hb_005833_020 Hb_000700_100 Hb_000700_100 Hb_007747_120--Hb_000700_100 Hb_001504_270 Hb_001504_270 Hb_007747_120--Hb_001504_270 Hb_008253_040 Hb_008253_040 Hb_007747_120--Hb_008253_040 Hb_000165_220 Hb_000165_220 Hb_007747_120--Hb_000165_220 Hb_008864_080--Hb_000165_220 Hb_008864_080--Hb_005833_020 Hb_001345_030 Hb_001345_030 Hb_008864_080--Hb_001345_030 Hb_077995_010 Hb_077995_010 Hb_008864_080--Hb_077995_010 Hb_009247_020 Hb_009247_020 Hb_008864_080--Hb_009247_020 Hb_000465_100 Hb_000465_100 Hb_005833_020--Hb_000465_100 Hb_003375_080 Hb_003375_080 Hb_005833_020--Hb_003375_080 Hb_005833_020--Hb_008253_040 Hb_004007_210 Hb_004007_210 Hb_005833_020--Hb_004007_210 Hb_000563_460 Hb_000563_460 Hb_000700_100--Hb_000563_460 Hb_000700_100--Hb_001504_270 Hb_002760_060 Hb_002760_060 Hb_000700_100--Hb_002760_060 Hb_003053_060 Hb_003053_060 Hb_000700_100--Hb_003053_060 Hb_003086_050 Hb_003086_050 Hb_000700_100--Hb_003086_050 Hb_006911_060 Hb_006911_060 Hb_001504_270--Hb_006911_060 Hb_000181_080 Hb_000181_080 Hb_001504_270--Hb_000181_080 Hb_000172_080 Hb_000172_080 Hb_001504_270--Hb_000172_080 Hb_001504_270--Hb_001345_030 Hb_000397_090 Hb_000397_090 Hb_001504_270--Hb_000397_090 Hb_078901_010 Hb_078901_010 Hb_001504_270--Hb_078901_010 Hb_000856_410 Hb_000856_410 Hb_008253_040--Hb_000856_410 Hb_004166_010 Hb_004166_010 Hb_008253_040--Hb_004166_010 Hb_008253_040--Hb_000172_080 Hb_004030_070 Hb_004030_070 Hb_008253_040--Hb_004030_070 Hb_001863_450 Hb_001863_450 Hb_008253_040--Hb_001863_450 Hb_008253_040--Hb_001345_030 Hb_000395_030 Hb_000395_030 Hb_000165_220--Hb_000395_030 Hb_007371_020 Hb_007371_020 Hb_000165_220--Hb_007371_020 Hb_008667_020 Hb_008667_020 Hb_000165_220--Hb_008667_020 Hb_021596_070 Hb_021596_070 Hb_000165_220--Hb_021596_070 Hb_010962_030 Hb_010962_030 Hb_000165_220--Hb_010962_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121921 2.6483 0.187227 0.142048 0.0654139 0.175136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0372295 0 0 0.140604 0.365068

CAGE analysis