Hb_000395_030

Information

Type -
Description -
Location Contig395: 56483-59823
Sequence    

Annotation

kegg
ID rcu:RCOM_1313170
description oligopeptide transporter, putative
nr
ID XP_002518903.1
description oligopeptide transporter, putative [Ricinus communis]
swissprot
ID Q6R3L0
description Metal-nicotianamine transporter YSL1 OS=Arabidopsis thaliana GN=YSL1 PE=2 SV=2
trembl
ID B9RYT4
description Oligopeptide transporter, putative OS=Ricinus communis GN=RCOM_1313170 PE=4 SV=1
Gene Ontology
ID GO:0005886
description metal-nicotianamine transporter ysl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39499: 56376-57249
cDNA
(Sanger)
(ID:Location)		 014_D12.ab1: 56501-57249 , 042_F20.ab1: 56499-57249

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_030 0.0 - - oligopeptide transporter, putative [Ricinus communis]
2 Hb_000165_220 0.1158818005 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]
3 Hb_021596_070 0.1256528279 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
4 Hb_008667_020 0.1275420813 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
5 Hb_007433_020 0.1303474275 - - hypothetical protein VITISV_005320 [Vitis vinifera]
6 Hb_000002_100 0.1367345108 - - phosphate transporter [Manihot esculenta]
7 Hb_001514_100 0.1370437669 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
8 Hb_002085_070 0.1451252351 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000397_090 0.1462373051 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
10 Hb_001568_060 0.1485561412 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
11 Hb_007371_020 0.1489182539 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
12 Hb_012018_020 0.1510102479 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
13 Hb_010962_030 0.1513830607 - - kinase, putative [Ricinus communis]
14 Hb_025030_010 0.1542971272 - - -
15 Hb_004230_060 0.1555850007 - - PREDICTED: ferritin, chloroplastic-like [Populus euphratica]
16 Hb_000417_030 0.1594156119 transcription factor TF Family: G2-like PREDICTED: putative two-component response regulator ARR19 [Jatropha curcas]
17 Hb_003529_230 0.1608551792 transcription factor TF Family: ERF -
18 Hb_000003_420 0.1613935387 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_157980_010 0.1620899128 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_077995_010 0.1634764638 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_000395_030 Hb_000395_030 Hb_000165_220 Hb_000165_220 Hb_000395_030--Hb_000165_220 Hb_021596_070 Hb_021596_070 Hb_000395_030--Hb_021596_070 Hb_008667_020 Hb_008667_020 Hb_000395_030--Hb_008667_020 Hb_007433_020 Hb_007433_020 Hb_000395_030--Hb_007433_020 Hb_000002_100 Hb_000002_100 Hb_000395_030--Hb_000002_100 Hb_001514_100 Hb_001514_100 Hb_000395_030--Hb_001514_100 Hb_008864_080 Hb_008864_080 Hb_000165_220--Hb_008864_080 Hb_007371_020 Hb_007371_020 Hb_000165_220--Hb_007371_020 Hb_000165_220--Hb_008667_020 Hb_000165_220--Hb_021596_070 Hb_010962_030 Hb_010962_030 Hb_000165_220--Hb_010962_030 Hb_021596_070--Hb_008667_020 Hb_021596_070--Hb_007433_020 Hb_021596_070--Hb_010962_030 Hb_011054_030 Hb_011054_030 Hb_021596_070--Hb_011054_030 Hb_021596_070--Hb_007371_020 Hb_111985_060 Hb_111985_060 Hb_021596_070--Hb_111985_060 Hb_008667_020--Hb_007433_020 Hb_008667_020--Hb_011054_030 Hb_008667_020--Hb_111985_060 Hb_008667_020--Hb_007371_020 Hb_004712_140 Hb_004712_140 Hb_008667_020--Hb_004712_140 Hb_019961_010 Hb_019961_010 Hb_007433_020--Hb_019961_010 Hb_001411_150 Hb_001411_150 Hb_007433_020--Hb_001411_150 Hb_007433_020--Hb_011054_030 Hb_007433_020--Hb_111985_060 Hb_002085_070 Hb_002085_070 Hb_000002_100--Hb_002085_070 Hb_000521_290 Hb_000521_290 Hb_000002_100--Hb_000521_290 Hb_012018_020 Hb_012018_020 Hb_000002_100--Hb_012018_020 Hb_000002_100--Hb_001514_100 Hb_000177_130 Hb_000177_130 Hb_000002_100--Hb_000177_130 Hb_010921_060 Hb_010921_060 Hb_000002_100--Hb_010921_060 Hb_001514_100--Hb_002085_070 Hb_002294_010 Hb_002294_010 Hb_001514_100--Hb_002294_010 Hb_001514_100--Hb_012018_020 Hb_001514_100--Hb_000521_290 Hb_004230_060 Hb_004230_060 Hb_001514_100--Hb_004230_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0397561 3.81601 0.899596 0.251466 0.0983936 0.00896618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0167629 0 0.726575 0.283831

CAGE analysis