Hb_004030_070

Information

Type -
Description -
Location Contig4030: 88533-96530
Sequence    

Annotation

kegg
ID cam:101509306
description enzymatic polyprotein-like
nr
ID XP_012070206.1
description PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9QD67
description Uncharacterized protein OS=Morus notabilis GN=L484_012687 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39965: 87704-88612 , PASA_asmbl_39967: 92159-92502
cDNA
(Sanger)
(ID:Location)		 014_J05r.ab1: 89657-97171

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004030_070 0.0 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
2 Hb_008253_040 0.1316328468 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
3 Hb_015882_020 0.1321954165 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
4 Hb_000333_120 0.1430563669 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
5 Hb_001345_030 0.1434081772 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
6 Hb_004166_010 0.1540456047 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
7 Hb_001504_270 0.1612865355 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
8 Hb_001921_010 0.1646220841 - - ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_000856_410 0.166703385 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_002571_010 0.1668021842 - - cationic amino acid transporter, putative [Ricinus communis]
11 Hb_000172_080 0.1692037021 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
12 Hb_001863_450 0.1695932773 - - cryptochrome 1.2 [Populus tremula]
13 Hb_002739_070 0.1711867815 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
14 Hb_000397_090 0.172734745 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
15 Hb_006052_040 0.1740479161 - - pyruvate decarboxylase [Hevea brasiliensis]
16 Hb_033312_090 0.1755607622 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
17 Hb_002475_130 0.1810650149 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
18 Hb_000705_130 0.1844440603 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000061_100 0.1872831681 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
20 Hb_000522_130 0.1884163663 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]

Gene co-expression network

sample Hb_004030_070 Hb_004030_070 Hb_008253_040 Hb_008253_040 Hb_004030_070--Hb_008253_040 Hb_015882_020 Hb_015882_020 Hb_004030_070--Hb_015882_020 Hb_000333_120 Hb_000333_120 Hb_004030_070--Hb_000333_120 Hb_001345_030 Hb_001345_030 Hb_004030_070--Hb_001345_030 Hb_004166_010 Hb_004166_010 Hb_004030_070--Hb_004166_010 Hb_001504_270 Hb_001504_270 Hb_004030_070--Hb_001504_270 Hb_000856_410 Hb_000856_410 Hb_008253_040--Hb_000856_410 Hb_008253_040--Hb_004166_010 Hb_000172_080 Hb_000172_080 Hb_008253_040--Hb_000172_080 Hb_001863_450 Hb_001863_450 Hb_008253_040--Hb_001863_450 Hb_008253_040--Hb_001345_030 Hb_000705_130 Hb_000705_130 Hb_015882_020--Hb_000705_130 Hb_033312_090 Hb_033312_090 Hb_015882_020--Hb_033312_090 Hb_000522_130 Hb_000522_130 Hb_015882_020--Hb_000522_130 Hb_000027_060 Hb_000027_060 Hb_015882_020--Hb_000027_060 Hb_001534_150 Hb_001534_150 Hb_015882_020--Hb_001534_150 Hb_108055_010 Hb_108055_010 Hb_000333_120--Hb_108055_010 Hb_000333_120--Hb_000705_130 Hb_000333_120--Hb_015882_020 Hb_000465_380 Hb_000465_380 Hb_000333_120--Hb_000465_380 Hb_010962_030 Hb_010962_030 Hb_000333_120--Hb_010962_030 Hb_010921_060 Hb_010921_060 Hb_000333_120--Hb_010921_060 Hb_000397_090 Hb_000397_090 Hb_001345_030--Hb_000397_090 Hb_000363_110 Hb_000363_110 Hb_001345_030--Hb_000363_110 Hb_077995_010 Hb_077995_010 Hb_001345_030--Hb_077995_010 Hb_001345_030--Hb_000172_080 Hb_001345_030--Hb_004166_010 Hb_000359_080 Hb_000359_080 Hb_001345_030--Hb_000359_080 Hb_004166_010--Hb_001863_450 Hb_004166_010--Hb_000172_080 Hb_000061_100 Hb_000061_100 Hb_004166_010--Hb_000061_100 Hb_004466_070 Hb_004466_070 Hb_004166_010--Hb_004466_070 Hb_002571_010 Hb_002571_010 Hb_004166_010--Hb_002571_010 Hb_006911_060 Hb_006911_060 Hb_001504_270--Hb_006911_060 Hb_000181_080 Hb_000181_080 Hb_001504_270--Hb_000181_080 Hb_001504_270--Hb_000172_080 Hb_001504_270--Hb_001345_030 Hb_001504_270--Hb_000397_090 Hb_078901_010 Hb_078901_010 Hb_001504_270--Hb_078901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0433335 3.2584 0.422695 0.557672 0.254742 0.0852587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0140359 0.0441811 0.0211395 0.385446 0.943174

CAGE analysis