Hb_000856_410

Information

Type -
Description -
Location Contig856: 366956-373765
Sequence    

Annotation

kegg
ID rcu:RCOM_1514310
description abc transporter, putative (EC:3.6.3.30)
nr
ID AIU41626.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q84K47
description ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1
trembl
ID A0A097P9Q6
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCA2 PE=2 SV=1
Gene Ontology
ID GO:0005576
description abc transporter a family member 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60617: 366972-368618 , PASA_asmbl_60619: 368627-368834 , PASA_asmbl_60620: 368845-369477 , PASA_asmbl_60621: 369493-370470 , PASA_asmbl_60622: 370511-371883 , PASA_asmbl_60623: 371925-372310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_410 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_008253_040 0.1066322401 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
3 Hb_000172_080 0.1592799426 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
4 Hb_004030_070 0.166703385 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
5 Hb_072276_010 0.1699716207 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
6 Hb_078901_010 0.173121727 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
7 Hb_004166_010 0.175844814 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
8 Hb_027402_100 0.1766985584 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
9 Hb_132840_090 0.1800395544 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
10 Hb_000538_170 0.1803545597 - - PREDICTED: butyrate--CoA ligase AAE11, peroxisomal-like [Jatropha curcas]
11 Hb_001345_030 0.1850680899 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
12 Hb_000359_080 0.1909094193 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
13 Hb_001504_270 0.190977954 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
14 Hb_000307_110 0.1922621528 - - hypothetical protein JCGZ_08160 [Jatropha curcas]
15 Hb_000221_060 0.1930075865 - - -
16 Hb_002341_040 0.1932687217 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
17 Hb_000345_110 0.1946214438 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
18 Hb_001863_450 0.195818077 - - cryptochrome 1.2 [Populus tremula]
19 Hb_000035_420 0.197632744 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
20 Hb_002687_150 0.2008319269 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_000856_410 Hb_000856_410 Hb_008253_040 Hb_008253_040 Hb_000856_410--Hb_008253_040 Hb_000172_080 Hb_000172_080 Hb_000856_410--Hb_000172_080 Hb_004030_070 Hb_004030_070 Hb_000856_410--Hb_004030_070 Hb_072276_010 Hb_072276_010 Hb_000856_410--Hb_072276_010 Hb_078901_010 Hb_078901_010 Hb_000856_410--Hb_078901_010 Hb_004166_010 Hb_004166_010 Hb_000856_410--Hb_004166_010 Hb_008253_040--Hb_004166_010 Hb_008253_040--Hb_000172_080 Hb_008253_040--Hb_004030_070 Hb_001863_450 Hb_001863_450 Hb_008253_040--Hb_001863_450 Hb_001345_030 Hb_001345_030 Hb_008253_040--Hb_001345_030 Hb_000359_080 Hb_000359_080 Hb_000172_080--Hb_000359_080 Hb_000172_080--Hb_004166_010 Hb_000172_080--Hb_078901_010 Hb_000172_080--Hb_001345_030 Hb_098160_010 Hb_098160_010 Hb_000172_080--Hb_098160_010 Hb_015882_020 Hb_015882_020 Hb_004030_070--Hb_015882_020 Hb_000333_120 Hb_000333_120 Hb_004030_070--Hb_000333_120 Hb_004030_070--Hb_001345_030 Hb_004030_070--Hb_004166_010 Hb_001504_270 Hb_001504_270 Hb_004030_070--Hb_001504_270 Hb_072276_010--Hb_001863_450 Hb_001230_020 Hb_001230_020 Hb_072276_010--Hb_001230_020 Hb_012812_010 Hb_012812_010 Hb_072276_010--Hb_012812_010 Hb_000221_060 Hb_000221_060 Hb_072276_010--Hb_000221_060 Hb_007850_010 Hb_007850_010 Hb_072276_010--Hb_007850_010 Hb_072276_010--Hb_004166_010 Hb_000805_150 Hb_000805_150 Hb_078901_010--Hb_000805_150 Hb_000434_050 Hb_000434_050 Hb_078901_010--Hb_000434_050 Hb_009476_010 Hb_009476_010 Hb_078901_010--Hb_009476_010 Hb_000245_270 Hb_000245_270 Hb_078901_010--Hb_000245_270 Hb_000373_250 Hb_000373_250 Hb_078901_010--Hb_000373_250 Hb_004166_010--Hb_001863_450 Hb_000061_100 Hb_000061_100 Hb_004166_010--Hb_000061_100 Hb_004466_070 Hb_004466_070 Hb_004166_010--Hb_004466_070 Hb_002571_010 Hb_002571_010 Hb_004166_010--Hb_002571_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.327322 18.5214 2.62829 2.67246 0.32552 0.743947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.301834 0.588147 0.865572 0.695303 5.47886

CAGE analysis