Hb_000221_060

Information

Type -
Description -
Location Contig221: 58661-63589
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22766: 63118-63421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_060 0.0 - - -
2 Hb_000803_060 0.1132831908 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
3 Hb_001489_120 0.1245730403 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
4 Hb_012787_040 0.1305796838 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
5 Hb_000071_140 0.1350185632 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
6 Hb_006414_020 0.1398452264 transcription factor TF Family: MYB -
7 Hb_000103_400 0.1451554031 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
8 Hb_000172_080 0.1457992928 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
9 Hb_000809_080 0.1461569795 - - 50S ribosomal protein L25, putative [Ricinus communis]
10 Hb_008103_100 0.1482759177 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
11 Hb_004166_010 0.1514279991 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
12 Hb_011360_090 0.1542510009 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
13 Hb_000776_050 0.1560171184 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
14 Hb_004032_310 0.156273868 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
15 Hb_000107_440 0.1569699777 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
16 Hb_000038_040 0.1584193592 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
17 Hb_006935_010 0.1587004218 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
18 Hb_003207_100 0.1606060574 transcription factor TF Family: TCP PREDICTED: transcription factor TCP9-like [Jatropha curcas]
19 Hb_001863_450 0.1613974502 - - cryptochrome 1.2 [Populus tremula]
20 Hb_001258_150 0.1617699656 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]

Gene co-expression network

sample Hb_000221_060 Hb_000221_060 Hb_000803_060 Hb_000803_060 Hb_000221_060--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_000221_060--Hb_001489_120 Hb_012787_040 Hb_012787_040 Hb_000221_060--Hb_012787_040 Hb_000071_140 Hb_000071_140 Hb_000221_060--Hb_000071_140 Hb_006414_020 Hb_006414_020 Hb_000221_060--Hb_006414_020 Hb_000103_400 Hb_000103_400 Hb_000221_060--Hb_000103_400 Hb_000803_060--Hb_012787_040 Hb_000803_060--Hb_006414_020 Hb_001258_150 Hb_001258_150 Hb_000803_060--Hb_001258_150 Hb_000803_060--Hb_001489_120 Hb_003752_120 Hb_003752_120 Hb_000803_060--Hb_003752_120 Hb_004032_310 Hb_004032_310 Hb_000803_060--Hb_004032_310 Hb_001489_120--Hb_000071_140 Hb_001489_120--Hb_001258_150 Hb_001489_120--Hb_004032_310 Hb_002793_060 Hb_002793_060 Hb_001489_120--Hb_002793_060 Hb_001489_120--Hb_006414_020 Hb_012787_040--Hb_003752_120 Hb_001662_170 Hb_001662_170 Hb_012787_040--Hb_001662_170 Hb_011360_090 Hb_011360_090 Hb_012787_040--Hb_011360_090 Hb_158696_010 Hb_158696_010 Hb_012787_040--Hb_158696_010 Hb_004106_010 Hb_004106_010 Hb_012787_040--Hb_004106_010 Hb_002534_050 Hb_002534_050 Hb_000071_140--Hb_002534_050 Hb_048755_020 Hb_048755_020 Hb_000071_140--Hb_048755_020 Hb_000069_730 Hb_000069_730 Hb_000071_140--Hb_000069_730 Hb_000071_140--Hb_004032_310 Hb_000071_140--Hb_001258_150 Hb_006414_020--Hb_012787_040 Hb_006414_020--Hb_011360_090 Hb_006414_020--Hb_000103_400 Hb_006414_020--Hb_001258_150 Hb_002272_140 Hb_002272_140 Hb_000103_400--Hb_002272_140 Hb_000181_080 Hb_000181_080 Hb_000103_400--Hb_000181_080 Hb_000473_080 Hb_000473_080 Hb_000103_400--Hb_000473_080 Hb_000359_080 Hb_000359_080 Hb_000103_400--Hb_000359_080 Hb_000103_400--Hb_000803_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.222239 4.88209 1.14753 0.874251 0.212777 0.149499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.389831 0.408357 0.173643 0.550728 0.766725

CAGE analysis