Hb_000225_050

Information

Type transcription factor
Description TF Family: WRKY
Location Contig225: 153395-155794
Sequence    

Annotation

kegg
ID rcu:RCOM_0855110
description WRKY transcription factor, putative
nr
ID XP_002517481.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9LXG8
description Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1
trembl
ID B9RUN6
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0855110 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23421: 154173-154531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000225_050 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_011885_010 0.1905424652 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_009372_010 0.213438584 - - -
4 Hb_153161_010 0.217633193 - - phospholipid-transporting atpase, putative [Ricinus communis]
5 Hb_021576_140 0.2403201839 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
6 Hb_028795_010 0.2522124649 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
7 Hb_018118_040 0.2526427507 - - -
8 Hb_000488_020 0.2527722336 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
9 Hb_143863_010 0.2546510977 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
10 Hb_002086_030 0.2561540995 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_001565_020 0.2583829377 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]
12 Hb_033926_010 0.2623241058 - - -
13 Hb_001584_220 0.2625625121 - - galactinol synthase [Manihot esculenta]
14 Hb_178127_010 0.2636761007 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
15 Hb_001141_360 0.2682902156 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
16 Hb_001059_080 0.2689924046 - - PREDICTED: F-box protein At1g61340-like [Musa acuminata subsp. malaccensis]
17 Hb_000538_010 0.2706998157 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
18 Hb_002374_330 0.2709584979 - - -
19 Hb_002157_250 0.2716563598 - - Pectinesterase-4 precursor, putative [Ricinus communis]
20 Hb_154471_010 0.2724039386 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]

Gene co-expression network

sample Hb_000225_050 Hb_000225_050 Hb_011885_010 Hb_011885_010 Hb_000225_050--Hb_011885_010 Hb_009372_010 Hb_009372_010 Hb_000225_050--Hb_009372_010 Hb_153161_010 Hb_153161_010 Hb_000225_050--Hb_153161_010 Hb_021576_140 Hb_021576_140 Hb_000225_050--Hb_021576_140 Hb_028795_010 Hb_028795_010 Hb_000225_050--Hb_028795_010 Hb_018118_040 Hb_018118_040 Hb_000225_050--Hb_018118_040 Hb_009897_020 Hb_009897_020 Hb_011885_010--Hb_009897_020 Hb_162074_010 Hb_162074_010 Hb_011885_010--Hb_162074_010 Hb_000488_020 Hb_000488_020 Hb_011885_010--Hb_000488_020 Hb_004800_190 Hb_004800_190 Hb_011885_010--Hb_004800_190 Hb_001514_060 Hb_001514_060 Hb_011885_010--Hb_001514_060 Hb_009372_010--Hb_028795_010 Hb_001114_230 Hb_001114_230 Hb_009372_010--Hb_001114_230 Hb_009372_010--Hb_021576_140 Hb_007481_030 Hb_007481_030 Hb_009372_010--Hb_007481_030 Hb_009372_010--Hb_153161_010 Hb_003633_140 Hb_003633_140 Hb_009372_010--Hb_003633_140 Hb_001565_020 Hb_001565_020 Hb_153161_010--Hb_001565_020 Hb_178127_010 Hb_178127_010 Hb_153161_010--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_153161_010--Hb_128695_030 Hb_021530_010 Hb_021530_010 Hb_153161_010--Hb_021530_010 Hb_003096_040 Hb_003096_040 Hb_153161_010--Hb_003096_040 Hb_002942_110 Hb_002942_110 Hb_153161_010--Hb_002942_110 Hb_005203_020 Hb_005203_020 Hb_021576_140--Hb_005203_020 Hb_021576_140--Hb_178127_010 Hb_001369_770 Hb_001369_770 Hb_021576_140--Hb_001369_770 Hb_012038_010 Hb_012038_010 Hb_021576_140--Hb_012038_010 Hb_000152_640 Hb_000152_640 Hb_021576_140--Hb_000152_640 Hb_000123_350 Hb_000123_350 Hb_021576_140--Hb_000123_350 Hb_028795_010--Hb_003633_140 Hb_002316_050 Hb_002316_050 Hb_028795_010--Hb_002316_050 Hb_018133_030 Hb_018133_030 Hb_028795_010--Hb_018133_030 Hb_000808_070 Hb_000808_070 Hb_028795_010--Hb_000808_070 Hb_004449_050 Hb_004449_050 Hb_028795_010--Hb_004449_050 Hb_087086_020 Hb_087086_020 Hb_018118_040--Hb_087086_020 Hb_000152_510 Hb_000152_510 Hb_018118_040--Hb_000152_510 Hb_000538_010 Hb_000538_010 Hb_018118_040--Hb_000538_010 Hb_004204_050 Hb_004204_050 Hb_018118_040--Hb_004204_050 Hb_025214_090 Hb_025214_090 Hb_018118_040--Hb_025214_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.117903 0.806737 0.189893 0.0285832 0.281813 0.126773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.022263 0.041959 0.0443829 0

CAGE analysis