Hb_000671_140

Information

Type -
Description -
Location Contig671: 202789-208897
Sequence    

Annotation

kegg
ID vvi:104878872
description uncharacterized LOC104878872
nr
ID CAN75325.1
description hypothetical protein VITISV_003767 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C5E1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003767 PE=4 SV=1
Gene Ontology
ID GO:0016301
description hypothetical protein VITISV_003767

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_140 0.0 - - hypothetical protein VITISV_003767 [Vitis vinifera]
2 Hb_005401_010 0.2216872377 - - -
3 Hb_001769_130 0.2383252724 - - -
4 Hb_044086_010 0.2500437783 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000840_170 0.2787868411 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
6 Hb_006573_010 0.2980147461 - - heat shock protein [Hevea brasiliensis]
7 Hb_000140_430 0.3007860922 - - -
8 Hb_065379_010 0.3030546961 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
9 Hb_000085_030 0.3064962628 - - -
10 Hb_002520_010 0.3082250222 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
11 Hb_004074_030 0.3127242362 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_002988_030 0.3163798044 - - hypothetical protein EUGRSUZ_K02073 [Eucalyptus grandis]
13 Hb_003992_200 0.3229268054 - - -
14 Hb_006043_030 0.3249990517 - - polyprotein [Citrus endogenous pararetrovirus]
15 Hb_000812_030 0.3280154804 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
16 Hb_023226_100 0.3288043087 - - PREDICTED: uncharacterized protein LOC104903172 [Beta vulgaris subsp. vulgaris]
17 Hb_001307_040 0.3309287492 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
18 Hb_001213_040 0.3335966678 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
19 Hb_007317_090 0.3350681999 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
20 Hb_005534_030 0.335940827 - - hypothetical protein JCGZ_00732 [Jatropha curcas]

Gene co-expression network

sample Hb_000671_140 Hb_000671_140 Hb_005401_010 Hb_005401_010 Hb_000671_140--Hb_005401_010 Hb_001769_130 Hb_001769_130 Hb_000671_140--Hb_001769_130 Hb_044086_010 Hb_044086_010 Hb_000671_140--Hb_044086_010 Hb_000840_170 Hb_000840_170 Hb_000671_140--Hb_000840_170 Hb_006573_010 Hb_006573_010 Hb_000671_140--Hb_006573_010 Hb_000140_430 Hb_000140_430 Hb_000671_140--Hb_000140_430 Hb_006043_030 Hb_006043_030 Hb_005401_010--Hb_006043_030 Hb_005401_010--Hb_001769_130 Hb_117001_010 Hb_117001_010 Hb_005401_010--Hb_117001_010 Hb_003527_020 Hb_003527_020 Hb_005401_010--Hb_003527_020 Hb_042463_050 Hb_042463_050 Hb_005401_010--Hb_042463_050 Hb_001769_130--Hb_044086_010 Hb_000812_030 Hb_000812_030 Hb_001769_130--Hb_000812_030 Hb_004545_100 Hb_004545_100 Hb_001769_130--Hb_004545_100 Hb_004074_030 Hb_004074_030 Hb_001769_130--Hb_004074_030 Hb_044086_010--Hb_004074_030 Hb_065379_010 Hb_065379_010 Hb_044086_010--Hb_065379_010 Hb_044086_010--Hb_000840_170 Hb_003914_030 Hb_003914_030 Hb_044086_010--Hb_003914_030 Hb_000988_030 Hb_000988_030 Hb_044086_010--Hb_000988_030 Hb_000840_170--Hb_065379_010 Hb_000185_150 Hb_000185_150 Hb_000840_170--Hb_000185_150 Hb_012528_030 Hb_012528_030 Hb_000840_170--Hb_012528_030 Hb_000840_170--Hb_000988_030 Hb_005529_030 Hb_005529_030 Hb_000840_170--Hb_005529_030 Hb_012753_040 Hb_012753_040 Hb_006573_010--Hb_012753_040 Hb_007257_010 Hb_007257_010 Hb_006573_010--Hb_007257_010 Hb_001766_040 Hb_001766_040 Hb_006573_010--Hb_001766_040 Hb_000302_300 Hb_000302_300 Hb_006573_010--Hb_000302_300 Hb_020247_050 Hb_020247_050 Hb_006573_010--Hb_020247_050 Hb_000991_050 Hb_000991_050 Hb_006573_010--Hb_000991_050 Hb_000085_030 Hb_000085_030 Hb_000140_430--Hb_000085_030 Hb_001160_010 Hb_001160_010 Hb_000140_430--Hb_001160_010 Hb_002637_020 Hb_002637_020 Hb_000140_430--Hb_002637_020 Hb_012184_030 Hb_012184_030 Hb_000140_430--Hb_012184_030 Hb_005451_020 Hb_005451_020 Hb_000140_430--Hb_005451_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0658437 0.143461 0.0416357 0 0.0494866 0.0553088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.19646

CAGE analysis