Hb_000812_030

Information

Type -
Description -
Location Contig812: 43379-47948
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P03554
description Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000812_030 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_000032_020 0.1792055749 - - Centromeric protein E, putative [Ricinus communis]
3 Hb_010921_020 0.1871099892 - - PREDICTED: cyclin-SDS [Jatropha curcas]
4 Hb_001229_030 0.1877458626 - - PREDICTED: uncharacterized protein LOC104783713 [Camelina sativa]
5 Hb_002110_110 0.1970060245 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
6 Hb_003106_250 0.1990623926 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
7 Hb_005183_140 0.2010549876 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
8 Hb_000879_030 0.2019182327 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
9 Hb_005542_010 0.2033148693 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
10 Hb_001769_130 0.205522895 - - -
11 Hb_042463_060 0.2081844959 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000126_070 0.2087875598 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
13 Hb_000175_270 0.2163281395 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
14 Hb_187005_010 0.2175304202 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
15 Hb_001405_230 0.220875087 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
16 Hb_001499_070 0.2212505369 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
17 Hb_001221_360 0.2217504059 - - late embryogenesis abundant, putative [Ricinus communis]
18 Hb_003020_300 0.2238183209 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004505_030 0.2305227598 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
20 Hb_000035_060 0.2323714103 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000812_030 Hb_000812_030 Hb_000032_020 Hb_000032_020 Hb_000812_030--Hb_000032_020 Hb_010921_020 Hb_010921_020 Hb_000812_030--Hb_010921_020 Hb_001229_030 Hb_001229_030 Hb_000812_030--Hb_001229_030 Hb_002110_110 Hb_002110_110 Hb_000812_030--Hb_002110_110 Hb_003106_250 Hb_003106_250 Hb_000812_030--Hb_003106_250 Hb_005183_140 Hb_005183_140 Hb_000812_030--Hb_005183_140 Hb_000879_030 Hb_000879_030 Hb_000032_020--Hb_000879_030 Hb_000032_020--Hb_002110_110 Hb_000221_180 Hb_000221_180 Hb_000032_020--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_000032_020--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000032_020--Hb_000175_270 Hb_005542_010 Hb_005542_010 Hb_000032_020--Hb_005542_010 Hb_000922_220 Hb_000922_220 Hb_010921_020--Hb_000922_220 Hb_010921_020--Hb_000175_270 Hb_001073_030 Hb_001073_030 Hb_010921_020--Hb_001073_030 Hb_010921_020--Hb_000032_020 Hb_010921_020--Hb_005183_140 Hb_000320_360 Hb_000320_360 Hb_010921_020--Hb_000320_360 Hb_001229_030--Hb_003106_250 Hb_009434_060 Hb_009434_060 Hb_001229_030--Hb_009434_060 Hb_001229_030--Hb_005542_010 Hb_011472_050 Hb_011472_050 Hb_001229_030--Hb_011472_050 Hb_001229_030--Hb_002110_110 Hb_042463_060 Hb_042463_060 Hb_001229_030--Hb_042463_060 Hb_002110_110--Hb_005542_010 Hb_002110_110--Hb_000879_030 Hb_001405_230 Hb_001405_230 Hb_002110_110--Hb_001405_230 Hb_010565_030 Hb_010565_030 Hb_002110_110--Hb_010565_030 Hb_002110_110--Hb_011472_050 Hb_004884_210 Hb_004884_210 Hb_003106_250--Hb_004884_210 Hb_004976_080 Hb_004976_080 Hb_003106_250--Hb_004976_080 Hb_003106_250--Hb_001405_230 Hb_003106_250--Hb_011472_050 Hb_000072_240 Hb_000072_240 Hb_003106_250--Hb_000072_240 Hb_000340_360 Hb_000340_360 Hb_005183_140--Hb_000340_360 Hb_000404_030 Hb_000404_030 Hb_005183_140--Hb_000404_030 Hb_014006_010 Hb_014006_010 Hb_005183_140--Hb_014006_010 Hb_002249_030 Hb_002249_030 Hb_005183_140--Hb_002249_030 Hb_001499_070 Hb_001499_070 Hb_005183_140--Hb_001499_070 Hb_006794_020 Hb_006794_020 Hb_005183_140--Hb_006794_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0434503 0.228511 0.0994257 0.0121453 0.0253863 0.0233475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00778934 0.0149754 0.0647653 0.217241

CAGE analysis