Hb_012528_030

Information

Type -
Description -
Location Contig12528: 21347-22674
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07775: 21775-23991
cDNA
(Sanger)
(ID:Location)		 048_P17.ab1: 22195-23056

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012528_030 0.0 - - -
2 Hb_012528_020 0.1607965738 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Jatropha curcas]
3 Hb_000327_080 0.1772714879 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
4 Hb_021537_010 0.1802982585 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
5 Hb_176368_010 0.1829772299 - - hypothetical protein POPTR_0019s00300g [Populus trichocarpa]
6 Hb_004254_100 0.1858980562 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
7 Hb_009449_090 0.1860398743 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
8 Hb_179154_020 0.1900928313 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
9 Hb_000086_050 0.1913967022 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
10 Hb_065379_010 0.1932661986 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
11 Hb_001959_270 0.1934457683 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_004884_020 0.1939709117 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
13 Hb_005214_150 0.195243766 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
14 Hb_000185_150 0.1974133426 - - Heme-binding protein, putative [Ricinus communis]
15 Hb_000840_170 0.1980256101 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
16 Hb_000345_330 0.1988018911 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance-like protein isoform 1 [Theobroma cacao]
17 Hb_031658_040 0.1994983242 - - -
18 Hb_000300_250 0.2011856142 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
19 Hb_005323_010 0.2014684875 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
20 Hb_003638_010 0.2014734262 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012528_030 Hb_012528_030 Hb_012528_020 Hb_012528_020 Hb_012528_030--Hb_012528_020 Hb_000327_080 Hb_000327_080 Hb_012528_030--Hb_000327_080 Hb_021537_010 Hb_021537_010 Hb_012528_030--Hb_021537_010 Hb_176368_010 Hb_176368_010 Hb_012528_030--Hb_176368_010 Hb_004254_100 Hb_004254_100 Hb_012528_030--Hb_004254_100 Hb_009449_090 Hb_009449_090 Hb_012528_030--Hb_009449_090 Hb_007123_050 Hb_007123_050 Hb_012528_020--Hb_007123_050 Hb_001059_130 Hb_001059_130 Hb_012528_020--Hb_001059_130 Hb_002475_040 Hb_002475_040 Hb_012528_020--Hb_002475_040 Hb_005323_010 Hb_005323_010 Hb_012528_020--Hb_005323_010 Hb_158092_080 Hb_158092_080 Hb_012528_020--Hb_158092_080 Hb_001989_050 Hb_001989_050 Hb_012528_020--Hb_001989_050 Hb_005214_150 Hb_005214_150 Hb_000327_080--Hb_005214_150 Hb_000327_080--Hb_009449_090 Hb_007818_040 Hb_007818_040 Hb_000327_080--Hb_007818_040 Hb_011671_230 Hb_011671_230 Hb_000327_080--Hb_011671_230 Hb_002571_030 Hb_002571_030 Hb_000327_080--Hb_002571_030 Hb_007576_220 Hb_007576_220 Hb_000327_080--Hb_007576_220 Hb_000826_070 Hb_000826_070 Hb_021537_010--Hb_000826_070 Hb_000664_120 Hb_000664_120 Hb_021537_010--Hb_000664_120 Hb_001999_140 Hb_001999_140 Hb_021537_010--Hb_001999_140 Hb_001953_120 Hb_001953_120 Hb_021537_010--Hb_001953_120 Hb_005211_020 Hb_005211_020 Hb_021537_010--Hb_005211_020 Hb_000029_350 Hb_000029_350 Hb_021537_010--Hb_000029_350 Hb_000859_050 Hb_000859_050 Hb_176368_010--Hb_000859_050 Hb_008103_080 Hb_008103_080 Hb_176368_010--Hb_008103_080 Hb_000445_300 Hb_000445_300 Hb_176368_010--Hb_000445_300 Hb_176368_010--Hb_000327_080 Hb_003739_030 Hb_003739_030 Hb_176368_010--Hb_003739_030 Hb_000922_140 Hb_000922_140 Hb_176368_010--Hb_000922_140 Hb_002942_130 Hb_002942_130 Hb_004254_100--Hb_002942_130 Hb_003900_030 Hb_003900_030 Hb_004254_100--Hb_003900_030 Hb_000771_170 Hb_000771_170 Hb_004254_100--Hb_000771_170 Hb_001040_070 Hb_001040_070 Hb_004254_100--Hb_001040_070 Hb_001408_030 Hb_001408_030 Hb_004254_100--Hb_001408_030 Hb_005883_020 Hb_005883_020 Hb_004254_100--Hb_005883_020 Hb_009449_090--Hb_007576_220 Hb_005539_040 Hb_005539_040 Hb_009449_090--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_009449_090--Hb_000086_050 Hb_009449_090--Hb_002571_030 Hb_000024_120 Hb_000024_120 Hb_009449_090--Hb_000024_120 Hb_007283_030 Hb_007283_030 Hb_009449_090--Hb_007283_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9276 3.42133 2.10502 0.805137 3.02585 1.57405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.328187 0.257997 0 2.67798 3.56734

CAGE analysis