Hb_005323_010

Information

Type -
Description -
Location Contig5323: 10733-14828
Sequence    

Annotation

kegg
ID rcu:RCOM_0855350
description nucleic acid binding protein, putative
nr
ID XP_012083150.1
description PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
swissprot
ID Q9LFD5
description Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1
trembl
ID A0A067LAR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09751 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding region rnp-1 (rna recognition motif) isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47425: 10909-14831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005323_010 0.0 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
2 Hb_001153_050 0.082308012 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
3 Hb_006573_160 0.0857890671 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
4 Hb_000878_160 0.0936008148 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
5 Hb_073973_150 0.1023351352 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
6 Hb_003398_100 0.1064761963 - - conserved hypothetical protein [Ricinus communis]
7 Hb_033554_020 0.10873169 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
8 Hb_001789_020 0.1092085592 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
9 Hb_001194_020 0.1098681576 - - microtubule associated protein xmap215, putative [Ricinus communis]
10 Hb_004324_330 0.1106101348 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
11 Hb_033642_040 0.1114767396 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
12 Hb_000098_240 0.1117176775 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
13 Hb_015026_100 0.1120069944 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
14 Hb_012528_020 0.1125029452 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Jatropha curcas]
15 Hb_000820_150 0.1126198011 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
16 Hb_008397_010 0.1141427494 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
17 Hb_000994_020 0.1141842823 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
18 Hb_001040_070 0.1143679217 - - PREDICTED: uncharacterized protein LOC105649523 [Jatropha curcas]
19 Hb_005333_140 0.1144284718 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
20 Hb_013358_070 0.1146261479 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_005323_010 Hb_005323_010 Hb_001153_050 Hb_001153_050 Hb_005323_010--Hb_001153_050 Hb_006573_160 Hb_006573_160 Hb_005323_010--Hb_006573_160 Hb_000878_160 Hb_000878_160 Hb_005323_010--Hb_000878_160 Hb_073973_150 Hb_073973_150 Hb_005323_010--Hb_073973_150 Hb_003398_100 Hb_003398_100 Hb_005323_010--Hb_003398_100 Hb_033554_020 Hb_033554_020 Hb_005323_010--Hb_033554_020 Hb_001153_050--Hb_006573_160 Hb_001153_050--Hb_073973_150 Hb_002814_110 Hb_002814_110 Hb_001153_050--Hb_002814_110 Hb_011972_020 Hb_011972_020 Hb_001153_050--Hb_011972_020 Hb_005895_010 Hb_005895_010 Hb_001153_050--Hb_005895_010 Hb_006573_160--Hb_011972_020 Hb_006573_160--Hb_002814_110 Hb_098209_010 Hb_098209_010 Hb_006573_160--Hb_098209_010 Hb_000302_170 Hb_000302_170 Hb_006573_160--Hb_000302_170 Hb_000102_050 Hb_000102_050 Hb_006573_160--Hb_000102_050 Hb_002461_020 Hb_002461_020 Hb_000878_160--Hb_002461_020 Hb_002600_070 Hb_002600_070 Hb_000878_160--Hb_002600_070 Hb_009178_010 Hb_009178_010 Hb_000878_160--Hb_009178_010 Hb_007283_010 Hb_007283_010 Hb_000878_160--Hb_007283_010 Hb_004324_330 Hb_004324_330 Hb_000878_160--Hb_004324_330 Hb_005333_140 Hb_005333_140 Hb_000878_160--Hb_005333_140 Hb_000640_070 Hb_000640_070 Hb_073973_150--Hb_000640_070 Hb_001194_020 Hb_001194_020 Hb_073973_150--Hb_001194_020 Hb_008397_010 Hb_008397_010 Hb_073973_150--Hb_008397_010 Hb_000284_230 Hb_000284_230 Hb_073973_150--Hb_000284_230 Hb_003104_040 Hb_003104_040 Hb_073973_150--Hb_003104_040 Hb_002475_040 Hb_002475_040 Hb_073973_150--Hb_002475_040 Hb_000820_150 Hb_000820_150 Hb_003398_100--Hb_000820_150 Hb_033642_040 Hb_033642_040 Hb_003398_100--Hb_033642_040 Hb_003398_100--Hb_003104_040 Hb_001789_020 Hb_001789_020 Hb_003398_100--Hb_001789_020 Hb_002784_030 Hb_002784_030 Hb_003398_100--Hb_002784_030 Hb_003398_100--Hb_073973_150 Hb_001373_160 Hb_001373_160 Hb_033554_020--Hb_001373_160 Hb_000243_130 Hb_000243_130 Hb_033554_020--Hb_000243_130 Hb_006618_090 Hb_006618_090 Hb_033554_020--Hb_006618_090 Hb_033554_020--Hb_000102_050 Hb_000994_020 Hb_000994_020 Hb_033554_020--Hb_000994_020 Hb_006501_010 Hb_006501_010 Hb_033554_020--Hb_006501_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4557 11.4786 17.7487 11.2596 11.4739 8.64384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.69976 2.70851 1.72031 12.0393 13.3988

CAGE analysis