Hb_005529_030

Information

Type -
Description -
Location Contig5529: 39548-41068
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03160g
description POPTRDRAFT_576119; hypothetical protein
nr
ID XP_011041380.1
description PREDICTED: cytochrome P450 94A1-like [Populus euphratica]
swissprot
ID O81117
description Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2
trembl
ID B9IHM1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03160g PE=3 SV=2
Gene Ontology
ID GO:0005506
description cytochrome p450 94a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005529_030 0.0 - - PREDICTED: cytochrome P450 94A1-like [Populus euphratica]
2 Hb_054865_060 0.1185234855 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
3 Hb_005534_030 0.1673230883 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
4 Hb_001307_040 0.1690347968 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
5 Hb_003900_030 0.1691799659 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
6 Hb_002027_090 0.1702030539 - - -
7 Hb_005271_160 0.171895193 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
8 Hb_137276_010 0.1727226517 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
9 Hb_004738_110 0.1740664915 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
10 Hb_003992_030 0.1797111436 - - Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Gossypium arboreum]
11 Hb_000347_270 0.1821825119 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
12 Hb_008092_050 0.1839670504 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
13 Hb_048141_030 0.1852156236 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
14 Hb_008092_060 0.1868702823 - - -
15 Hb_007313_100 0.1872480657 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
16 Hb_000358_140 0.187316813 - - conserved hypothetical protein [Ricinus communis]
17 Hb_027380_230 0.1882920373 - - PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
18 Hb_143629_060 0.1888897339 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
19 Hb_000084_280 0.1890125532 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
20 Hb_002495_060 0.1940201809 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005529_030 Hb_005529_030 Hb_054865_060 Hb_054865_060 Hb_005529_030--Hb_054865_060 Hb_005534_030 Hb_005534_030 Hb_005529_030--Hb_005534_030 Hb_001307_040 Hb_001307_040 Hb_005529_030--Hb_001307_040 Hb_003900_030 Hb_003900_030 Hb_005529_030--Hb_003900_030 Hb_002027_090 Hb_002027_090 Hb_005529_030--Hb_002027_090 Hb_005271_160 Hb_005271_160 Hb_005529_030--Hb_005271_160 Hb_054865_060--Hb_002027_090 Hb_054865_060--Hb_005271_160 Hb_048141_030 Hb_048141_030 Hb_054865_060--Hb_048141_030 Hb_137276_010 Hb_137276_010 Hb_054865_060--Hb_137276_010 Hb_004738_110 Hb_004738_110 Hb_054865_060--Hb_004738_110 Hb_005534_030--Hb_001307_040 Hb_008092_050 Hb_008092_050 Hb_005534_030--Hb_008092_050 Hb_005534_030--Hb_005271_160 Hb_005534_030--Hb_054865_060 Hb_006911_070 Hb_006911_070 Hb_005534_030--Hb_006911_070 Hb_001307_040--Hb_008092_050 Hb_008092_060 Hb_008092_060 Hb_001307_040--Hb_008092_060 Hb_001307_040--Hb_005271_160 Hb_001408_030 Hb_001408_030 Hb_001307_040--Hb_001408_030 Hb_001307_040--Hb_003900_030 Hb_000395_090 Hb_000395_090 Hb_001307_040--Hb_000395_090 Hb_005883_020 Hb_005883_020 Hb_003900_030--Hb_005883_020 Hb_002233_130 Hb_002233_130 Hb_003900_030--Hb_002233_130 Hb_004254_100 Hb_004254_100 Hb_003900_030--Hb_004254_100 Hb_007035_040 Hb_007035_040 Hb_003900_030--Hb_007035_040 Hb_001916_100 Hb_001916_100 Hb_003900_030--Hb_001916_100 Hb_000363_060 Hb_000363_060 Hb_003900_030--Hb_000363_060 Hb_000358_140 Hb_000358_140 Hb_002027_090--Hb_000358_140 Hb_010812_050 Hb_010812_050 Hb_002027_090--Hb_010812_050 Hb_005496_050 Hb_005496_050 Hb_002027_090--Hb_005496_050 Hb_041327_020 Hb_041327_020 Hb_002027_090--Hb_041327_020 Hb_006816_180 Hb_006816_180 Hb_002027_090--Hb_006816_180 Hb_000627_250 Hb_000627_250 Hb_002027_090--Hb_000627_250 Hb_008206_060 Hb_008206_060 Hb_005271_160--Hb_008206_060 Hb_065525_130 Hb_065525_130 Hb_005271_160--Hb_065525_130 Hb_005271_160--Hb_008092_050 Hb_005271_160--Hb_003900_030 Hb_012098_150 Hb_012098_150 Hb_005271_160--Hb_012098_150 Hb_001959_240 Hb_001959_240 Hb_005271_160--Hb_001959_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7095 15.4217 16.1079 12.5798 29.7329 19.8495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54858 2.46628 2.36349 1.99745 48.2851

CAGE analysis