Hb_000959_050

Information

Type -
Description -
Location Contig959: 44064-45180
Sequence    

Annotation

kegg
ID cit:102627366
description uncharacterized LOC102627366
nr
ID XP_006478657.1
description PREDICTED: uncharacterized protein LOC102627366 [Citrus sinensis]
swissprot
ID Q6XKE6
description Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1
trembl
ID A0A067L7C3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03884 PE=4 SV=1
Gene Ontology
ID GO:0008233
description movement protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_050 0.0 - - PREDICTED: uncharacterized protein LOC102627366 [Citrus sinensis]
2 Hb_000060_130 0.1506768628 - - -
3 Hb_003527_020 0.1525733698 - - BnaC01g27150D [Brassica napus]
4 Hb_001247_260 0.1615108088 - - -
5 Hb_000636_010 0.1621603266 - - PREDICTED: uncharacterized protein LOC105767086 [Gossypium raimondii]
6 Hb_002154_080 0.1922101523 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
7 Hb_007543_020 0.2003442694 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
8 Hb_142522_040 0.2019099725 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_003302_010 0.2083946824 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
10 Hb_000512_050 0.2095570479 - - hypothetical protein VITISV_005640 [Vitis vinifera]
11 Hb_080033_020 0.2111749527 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
12 Hb_008642_050 0.2149508349 - - -
13 Hb_089568_010 0.2163801159 - - ferric reductase oxidase [Manihot esculenta]
14 Hb_009434_060 0.2173161223 - - T4.15 [Malus x robusta]
15 Hb_028048_020 0.2195880717 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
16 Hb_180214_010 0.2200669814 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
17 Hb_045785_010 0.2211038901 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_144027_010 0.2220551029 - - -
19 Hb_003169_040 0.2240608674 - - -
20 Hb_090889_010 0.2288731618 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]

Gene co-expression network

sample Hb_000959_050 Hb_000959_050 Hb_000060_130 Hb_000060_130 Hb_000959_050--Hb_000060_130 Hb_003527_020 Hb_003527_020 Hb_000959_050--Hb_003527_020 Hb_001247_260 Hb_001247_260 Hb_000959_050--Hb_001247_260 Hb_000636_010 Hb_000636_010 Hb_000959_050--Hb_000636_010 Hb_002154_080 Hb_002154_080 Hb_000959_050--Hb_002154_080 Hb_007543_020 Hb_007543_020 Hb_000959_050--Hb_007543_020 Hb_000060_130--Hb_007543_020 Hb_005092_090 Hb_005092_090 Hb_000060_130--Hb_005092_090 Hb_116784_020 Hb_116784_020 Hb_000060_130--Hb_116784_020 Hb_003302_010 Hb_003302_010 Hb_000060_130--Hb_003302_010 Hb_004899_210 Hb_004899_210 Hb_000060_130--Hb_004899_210 Hb_001366_260 Hb_001366_260 Hb_000060_130--Hb_001366_260 Hb_003527_020--Hb_000060_130 Hb_006043_030 Hb_006043_030 Hb_003527_020--Hb_006043_030 Hb_062503_010 Hb_062503_010 Hb_003527_020--Hb_062503_010 Hb_005183_060 Hb_005183_060 Hb_003527_020--Hb_005183_060 Hb_045785_010 Hb_045785_010 Hb_003527_020--Hb_045785_010 Hb_001247_260--Hb_000636_010 Hb_032733_030 Hb_032733_030 Hb_001247_260--Hb_032733_030 Hb_080033_020 Hb_080033_020 Hb_001247_260--Hb_080033_020 Hb_000512_050 Hb_000512_050 Hb_001247_260--Hb_000512_050 Hb_028248_010 Hb_028248_010 Hb_001247_260--Hb_028248_010 Hb_028048_020 Hb_028048_020 Hb_000636_010--Hb_028048_020 Hb_000636_010--Hb_080033_020 Hb_000636_010--Hb_032733_030 Hb_000636_010--Hb_003527_020 Hb_001863_410 Hb_001863_410 Hb_002154_080--Hb_001863_410 Hb_142522_040 Hb_142522_040 Hb_002154_080--Hb_142522_040 Hb_000812_030 Hb_000812_030 Hb_002154_080--Hb_000812_030 Hb_000028_270 Hb_000028_270 Hb_002154_080--Hb_000028_270 Hb_000527_120 Hb_000527_120 Hb_002154_080--Hb_000527_120 Hb_000820_100 Hb_000820_100 Hb_007543_020--Hb_000820_100 Hb_007543_020--Hb_001366_260 Hb_007543_020--Hb_116784_020 Hb_009434_060 Hb_009434_060 Hb_007543_020--Hb_009434_060 Hb_000123_340 Hb_000123_340 Hb_007543_020--Hb_000123_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0947584 0.0553837 0 0.0246917 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0357787 0.270635

CAGE analysis