Hb_000636_010

Information

Type -
Description -
Location Contig636: 29851-45001
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012442064.1
description PREDICTED: uncharacterized protein LOC105767086 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000636_010 0.0 - - PREDICTED: uncharacterized protein LOC105767086 [Gossypium raimondii]
2 Hb_001247_260 0.0687456281 - - -
3 Hb_000959_050 0.1621603266 - - PREDICTED: uncharacterized protein LOC102627366 [Citrus sinensis]
4 Hb_028048_020 0.2173971237 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
5 Hb_080033_020 0.2346504727 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
6 Hb_032733_030 0.2359468667 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
7 Hb_003527_020 0.244139643 - - BnaC01g27150D [Brassica napus]
8 Hb_001587_050 0.2536222829 - - -
9 Hb_000512_050 0.2545331437 - - hypothetical protein VITISV_005640 [Vitis vinifera]
10 Hb_000060_130 0.2650889698 - - -
11 Hb_144045_010 0.2656086215 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
12 Hb_089568_010 0.2663375558 - - ferric reductase oxidase [Manihot esculenta]
13 Hb_003302_010 0.2667564412 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
14 Hb_062192_010 0.2677256314 - - -
15 Hb_004880_090 0.2693928567 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
16 Hb_004407_030 0.2704473425 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
17 Hb_052548_010 0.2706928088 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
18 Hb_005623_060 0.2723652566 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000733_250 0.2750648159 - - serine/threonine protein phosphatase PP1 isozyme 1 [Loa loa]
20 Hb_000227_260 0.27774384 - - PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000636_010 Hb_000636_010 Hb_001247_260 Hb_001247_260 Hb_000636_010--Hb_001247_260 Hb_000959_050 Hb_000959_050 Hb_000636_010--Hb_000959_050 Hb_028048_020 Hb_028048_020 Hb_000636_010--Hb_028048_020 Hb_080033_020 Hb_080033_020 Hb_000636_010--Hb_080033_020 Hb_032733_030 Hb_032733_030 Hb_000636_010--Hb_032733_030 Hb_003527_020 Hb_003527_020 Hb_000636_010--Hb_003527_020 Hb_001247_260--Hb_000959_050 Hb_001247_260--Hb_032733_030 Hb_001247_260--Hb_080033_020 Hb_000512_050 Hb_000512_050 Hb_001247_260--Hb_000512_050 Hb_028248_010 Hb_028248_010 Hb_001247_260--Hb_028248_010 Hb_000060_130 Hb_000060_130 Hb_000959_050--Hb_000060_130 Hb_000959_050--Hb_003527_020 Hb_002154_080 Hb_002154_080 Hb_000959_050--Hb_002154_080 Hb_007543_020 Hb_007543_020 Hb_000959_050--Hb_007543_020 Hb_000946_080 Hb_000946_080 Hb_028048_020--Hb_000946_080 Hb_028048_020--Hb_000959_050 Hb_090889_010 Hb_090889_010 Hb_028048_020--Hb_090889_010 Hb_000039_190 Hb_000039_190 Hb_028048_020--Hb_000039_190 Hb_028048_020--Hb_001247_260 Hb_080033_020--Hb_000512_050 Hb_005623_060 Hb_005623_060 Hb_080033_020--Hb_005623_060 Hb_003302_010 Hb_003302_010 Hb_080033_020--Hb_003302_010 Hb_001587_050 Hb_001587_050 Hb_080033_020--Hb_001587_050 Hb_004407_030 Hb_004407_030 Hb_080033_020--Hb_004407_030 Hb_003169_040 Hb_003169_040 Hb_080033_020--Hb_003169_040 Hb_000522_030 Hb_000522_030 Hb_032733_030--Hb_000522_030 Hb_012528_040 Hb_012528_040 Hb_032733_030--Hb_012528_040 Hb_014109_020 Hb_014109_020 Hb_032733_030--Hb_014109_020 Hb_000135_080 Hb_000135_080 Hb_032733_030--Hb_000135_080 Hb_032733_030--Hb_005623_060 Hb_005678_030 Hb_005678_030 Hb_032733_030--Hb_005678_030 Hb_003527_020--Hb_000060_130 Hb_006043_030 Hb_006043_030 Hb_003527_020--Hb_006043_030 Hb_062503_010 Hb_062503_010 Hb_003527_020--Hb_062503_010 Hb_005183_060 Hb_005183_060 Hb_003527_020--Hb_005183_060 Hb_045785_010 Hb_045785_010 Hb_003527_020--Hb_045785_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0183421 0.0299582 0 0.0195535 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00718115 0.114374

CAGE analysis