Hb_000946_080

Information

Type -
Description -
Location Contig946: 94408-97527
Sequence    

Annotation

kegg
ID pmum:103322667
description chaperone protein dnaJ 20, chloroplastic
nr
ID XP_008222817.1
description PREDICTED: chaperone protein dnaJ 20, chloroplastic [Prunus mume]
swissprot
ID B9KAB9
description Chaperone protein DnaJ OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=dnaJ PE=3 SV=1
trembl
ID K4A0X1
description Uncharacterized protein OS=Setaria italica GN=Si032512m.g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000946_080 0.0 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Prunus mume]
2 Hb_028048_020 0.2175899064 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_131719_010 0.2625508797 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
4 Hb_002639_130 0.2872043883 - - hypothetical protein JCGZ_08129 [Jatropha curcas]
5 Hb_004176_090 0.2885799072 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
6 Hb_001631_110 0.2909444745 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
7 Hb_017098_020 0.2968813837 - - Zinc finger protein GIS2 [Medicago truncatula]
8 Hb_145331_010 0.2977048138 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
9 Hb_000230_250 0.2990724302 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
10 Hb_000160_080 0.3014684706 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM2b-like [Jatropha curcas]
11 Hb_003125_080 0.304309455 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
12 Hb_004800_140 0.3045809999 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
13 Hb_003062_020 0.3046525026 - - Polyprotein, putative [Solanum demissum]
14 Hb_008341_010 0.3060959604 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
15 Hb_137701_020 0.3074925534 - - putative protein kinase [Oryza sativa Japonica Group]
16 Hb_003349_020 0.3080081808 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
17 Hb_065133_010 0.3098971533 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
18 Hb_012807_070 0.3099261688 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
19 Hb_001040_090 0.31286174 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
20 Hb_004880_120 0.3135469421 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000946_080 Hb_000946_080 Hb_028048_020 Hb_028048_020 Hb_000946_080--Hb_028048_020 Hb_131719_010 Hb_131719_010 Hb_000946_080--Hb_131719_010 Hb_002639_130 Hb_002639_130 Hb_000946_080--Hb_002639_130 Hb_004176_090 Hb_004176_090 Hb_000946_080--Hb_004176_090 Hb_001631_110 Hb_001631_110 Hb_000946_080--Hb_001631_110 Hb_017098_020 Hb_017098_020 Hb_000946_080--Hb_017098_020 Hb_000636_010 Hb_000636_010 Hb_028048_020--Hb_000636_010 Hb_000959_050 Hb_000959_050 Hb_028048_020--Hb_000959_050 Hb_090889_010 Hb_090889_010 Hb_028048_020--Hb_090889_010 Hb_000039_190 Hb_000039_190 Hb_028048_020--Hb_000039_190 Hb_001247_260 Hb_001247_260 Hb_028048_020--Hb_001247_260 Hb_001040_090 Hb_001040_090 Hb_131719_010--Hb_001040_090 Hb_001953_110 Hb_001953_110 Hb_131719_010--Hb_001953_110 Hb_003349_020 Hb_003349_020 Hb_131719_010--Hb_003349_020 Hb_003970_010 Hb_003970_010 Hb_131719_010--Hb_003970_010 Hb_002818_160 Hb_002818_160 Hb_131719_010--Hb_002818_160 Hb_135714_010 Hb_135714_010 Hb_131719_010--Hb_135714_010 Hb_000318_410 Hb_000318_410 Hb_002639_130--Hb_000318_410 Hb_033930_010 Hb_033930_010 Hb_002639_130--Hb_033930_010 Hb_000086_640 Hb_000086_640 Hb_002639_130--Hb_000086_640 Hb_000836_580 Hb_000836_580 Hb_002639_130--Hb_000836_580 Hb_000035_490 Hb_000035_490 Hb_002639_130--Hb_000035_490 Hb_002997_110 Hb_002997_110 Hb_002639_130--Hb_002997_110 Hb_145331_010 Hb_145331_010 Hb_004176_090--Hb_145331_010 Hb_137701_020 Hb_137701_020 Hb_004176_090--Hb_137701_020 Hb_001021_020 Hb_001021_020 Hb_004176_090--Hb_001021_020 Hb_001205_050 Hb_001205_050 Hb_004176_090--Hb_001205_050 Hb_004176_090--Hb_131719_010 Hb_005183_060 Hb_005183_060 Hb_004176_090--Hb_005183_060 Hb_008341_010 Hb_008341_010 Hb_001631_110--Hb_008341_010 Hb_004241_170 Hb_004241_170 Hb_001631_110--Hb_004241_170 Hb_000732_160 Hb_000732_160 Hb_001631_110--Hb_000732_160 Hb_010091_030 Hb_010091_030 Hb_001631_110--Hb_010091_030 Hb_004800_140 Hb_004800_140 Hb_001631_110--Hb_004800_140 Hb_001631_110--Hb_017098_020 Hb_012807_070 Hb_012807_070 Hb_017098_020--Hb_012807_070 Hb_009780_010 Hb_009780_010 Hb_017098_020--Hb_009780_010 Hb_003062_020 Hb_003062_020 Hb_017098_020--Hb_003062_020 Hb_011038_020 Hb_011038_020 Hb_017098_020--Hb_011038_020 Hb_017098_020--Hb_090889_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.534693 0.569994 0 0.194253 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.062608 0 0.025461 0.495988

CAGE analysis