Hb_001021_020

Information

Type -
Description -
Location Contig1021: 5907-6161
Sequence    

Annotation

kegg
ID rcu:RCOM_1439670
description hypothetical protein
nr
ID KDP28128.1
description hypothetical protein JCGZ_13899 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13899 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_020 0.0 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
2 Hb_000189_460 0.0269138847 - - -
3 Hb_002977_020 0.0474216712 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
4 Hb_145331_010 0.1176351128 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
5 Hb_001242_030 0.1400199136 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011900_030 0.1417152662 - - hypothetical protein JCGZ_13686 [Jatropha curcas]
7 Hb_011930_060 0.1462329698 - - nitrate transporter, putative [Ricinus communis]
8 Hb_001205_050 0.1502409562 - - -
9 Hb_004176_090 0.1525437856 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
10 Hb_100404_010 0.1540769778 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
11 Hb_000834_170 0.1573406817 - - polygalacturonase, putative [Ricinus communis]
12 Hb_001546_170 0.1686315562 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_002025_220 0.1710913526 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
14 Hb_147069_010 0.1808337311 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
15 Hb_000638_270 0.1822908302 - - -
16 Hb_005305_140 0.1881008674 - - unknown [Populus trichocarpa]
17 Hb_001953_110 0.1927522479 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
18 Hb_001040_090 0.1961128441 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
19 Hb_006970_040 0.1965641898 - - PREDICTED: uncharacterized protein LOC105650489 [Jatropha curcas]
20 Hb_004109_140 0.1991621784 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001021_020 Hb_001021_020 Hb_000189_460 Hb_000189_460 Hb_001021_020--Hb_000189_460 Hb_002977_020 Hb_002977_020 Hb_001021_020--Hb_002977_020 Hb_145331_010 Hb_145331_010 Hb_001021_020--Hb_145331_010 Hb_001242_030 Hb_001242_030 Hb_001021_020--Hb_001242_030 Hb_011900_030 Hb_011900_030 Hb_001021_020--Hb_011900_030 Hb_011930_060 Hb_011930_060 Hb_001021_020--Hb_011930_060 Hb_000189_460--Hb_002977_020 Hb_000189_460--Hb_011900_030 Hb_000189_460--Hb_001242_030 Hb_000189_460--Hb_011930_060 Hb_000189_460--Hb_145331_010 Hb_002977_020--Hb_001242_030 Hb_002977_020--Hb_011930_060 Hb_002977_020--Hb_011900_030 Hb_100404_010 Hb_100404_010 Hb_002977_020--Hb_100404_010 Hb_004176_090 Hb_004176_090 Hb_145331_010--Hb_004176_090 Hb_001205_050 Hb_001205_050 Hb_145331_010--Hb_001205_050 Hb_145331_010--Hb_002977_020 Hb_147069_010 Hb_147069_010 Hb_145331_010--Hb_147069_010 Hb_001546_170 Hb_001546_170 Hb_001242_030--Hb_001546_170 Hb_000227_180 Hb_000227_180 Hb_001242_030--Hb_000227_180 Hb_001338_130 Hb_001338_130 Hb_001242_030--Hb_001338_130 Hb_001242_030--Hb_011930_060 Hb_007761_040 Hb_007761_040 Hb_011900_030--Hb_007761_040 Hb_031862_160 Hb_031862_160 Hb_011900_030--Hb_031862_160 Hb_011900_030--Hb_001242_030 Hb_000834_170 Hb_000834_170 Hb_011930_060--Hb_000834_170 Hb_002025_220 Hb_002025_220 Hb_011930_060--Hb_002025_220 Hb_005305_140 Hb_005305_140 Hb_011930_060--Hb_005305_140 Hb_000115_020 Hb_000115_020 Hb_011930_060--Hb_000115_020 Hb_011930_060--Hb_001338_130 Hb_107373_010 Hb_107373_010 Hb_011930_060--Hb_107373_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.598632 1.82461 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.93608

CAGE analysis