Hb_011900_030

Information

Type -
Description -
Location Contig11900: 45949-46443
Sequence    

Annotation

kegg
ID rcu:RCOM_0862440
description hypothetical protein
nr
ID KDP32905.1
description hypothetical protein JCGZ_13686 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13686 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05617: 43182-45455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011900_030 0.0 - - hypothetical protein JCGZ_13686 [Jatropha curcas]
2 Hb_007761_040 0.1081221348 - - carbonyl reductase, putative [Ricinus communis]
3 Hb_000189_460 0.1173473674 - - -
4 Hb_031862_160 0.117804615 - - unnamed protein product [Vitis vinifera]
5 Hb_002977_020 0.1299638271 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
6 Hb_001021_020 0.1417152662 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
7 Hb_001242_030 0.1452806515 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002571_110 0.1493634989 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
9 Hb_011930_060 0.14969703 - - nitrate transporter, putative [Ricinus communis]
10 Hb_010642_020 0.1612408562 - - NDH-dependent cyclic electron flow 1 isoform 2 [Theobroma cacao]
11 Hb_000864_040 0.1622675758 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000189_610 0.1623638822 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
13 Hb_001543_010 0.1624103629 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010904_020 0.1627803354 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
15 Hb_124540_010 0.1629816582 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
16 Hb_001935_050 0.1631855376 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
17 Hb_099335_020 0.1692779155 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
18 Hb_002762_020 0.1697181661 - - hypothetical protein VITISV_043202 [Vitis vinifera]
19 Hb_000032_120 0.1697527984 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
20 Hb_001068_060 0.1698309154 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]

Gene co-expression network

sample Hb_011900_030 Hb_011900_030 Hb_007761_040 Hb_007761_040 Hb_011900_030--Hb_007761_040 Hb_000189_460 Hb_000189_460 Hb_011900_030--Hb_000189_460 Hb_031862_160 Hb_031862_160 Hb_011900_030--Hb_031862_160 Hb_002977_020 Hb_002977_020 Hb_011900_030--Hb_002977_020 Hb_001021_020 Hb_001021_020 Hb_011900_030--Hb_001021_020 Hb_001242_030 Hb_001242_030 Hb_011900_030--Hb_001242_030 Hb_002571_110 Hb_002571_110 Hb_007761_040--Hb_002571_110 Hb_014870_010 Hb_014870_010 Hb_007761_040--Hb_014870_010 Hb_001935_050 Hb_001935_050 Hb_007761_040--Hb_001935_050 Hb_000864_040 Hb_000864_040 Hb_007761_040--Hb_000864_040 Hb_000084_270 Hb_000084_270 Hb_007761_040--Hb_000084_270 Hb_000189_460--Hb_001021_020 Hb_000189_460--Hb_002977_020 Hb_000189_460--Hb_001242_030 Hb_011930_060 Hb_011930_060 Hb_000189_460--Hb_011930_060 Hb_145331_010 Hb_145331_010 Hb_000189_460--Hb_145331_010 Hb_031862_160--Hb_007761_040 Hb_031862_160--Hb_002571_110 Hb_000037_210 Hb_000037_210 Hb_031862_160--Hb_000037_210 Hb_009083_060 Hb_009083_060 Hb_031862_160--Hb_009083_060 Hb_003428_020 Hb_003428_020 Hb_031862_160--Hb_003428_020 Hb_002977_020--Hb_001021_020 Hb_002977_020--Hb_001242_030 Hb_002977_020--Hb_011930_060 Hb_100404_010 Hb_100404_010 Hb_002977_020--Hb_100404_010 Hb_001021_020--Hb_145331_010 Hb_001021_020--Hb_001242_030 Hb_001021_020--Hb_011930_060 Hb_001546_170 Hb_001546_170 Hb_001242_030--Hb_001546_170 Hb_000227_180 Hb_000227_180 Hb_001242_030--Hb_000227_180 Hb_001338_130 Hb_001338_130 Hb_001242_030--Hb_001338_130 Hb_001242_030--Hb_011930_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0500105 0.517982 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.3999

CAGE analysis