Hb_009083_060

Information

Type -
Description -
Location Contig9083: 31835-32130
Sequence    

Annotation

kegg
ID pmum:103344557
description uncharacterized LOC103344557
nr
ID XP_008246373.1
description PREDICTED: uncharacterized protein LOC103344557 [Prunus mume]
swissprot
ID -
description -
trembl
ID B9T5G5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0078700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62100: 31309-31701 , PASA_asmbl_62101: 31797-32074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009083_060 0.0 - - PREDICTED: uncharacterized protein LOC103344557 [Prunus mume]
2 Hb_000037_210 0.0008510558 - - -
3 Hb_003428_020 0.0034595528 - - PREDICTED: uncharacterized protein LOC105140247 [Populus euphratica]
4 Hb_007676_090 0.0078528399 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]
5 Hb_000186_020 0.0380225125 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
6 Hb_000084_270 0.0451979962 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
7 Hb_099509_010 0.0579135065 - - PREDICTED: vacuolar iron transporter 1-like isoform X2 [Jatropha curcas]
8 Hb_014870_010 0.067771732 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
9 Hb_000103_170 0.0760553747 - - uncharacterized protein LOC100501254 [Zea mays]
10 Hb_006277_090 0.0833761544 - - PREDICTED: uncharacterized protein LOC105649700 [Jatropha curcas]
11 Hb_002571_110 0.0930485761 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
12 Hb_002701_100 0.1026416974 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
13 Hb_001935_050 0.1035406317 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
14 Hb_000032_130 0.1162673376 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 12 [Jatropha curcas]
15 Hb_000016_140 0.11841598 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
16 Hb_001085_280 0.1203405713 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
17 Hb_000864_040 0.1223574781 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_097104_010 0.1239617083 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
19 Hb_000189_610 0.1268139099 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
20 Hb_001543_010 0.1280129617 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009083_060 Hb_009083_060 Hb_000037_210 Hb_000037_210 Hb_009083_060--Hb_000037_210 Hb_003428_020 Hb_003428_020 Hb_009083_060--Hb_003428_020 Hb_007676_090 Hb_007676_090 Hb_009083_060--Hb_007676_090 Hb_000186_020 Hb_000186_020 Hb_009083_060--Hb_000186_020 Hb_000084_270 Hb_000084_270 Hb_009083_060--Hb_000084_270 Hb_099509_010 Hb_099509_010 Hb_009083_060--Hb_099509_010 Hb_000037_210--Hb_003428_020 Hb_000037_210--Hb_007676_090 Hb_000037_210--Hb_000186_020 Hb_000037_210--Hb_000084_270 Hb_000037_210--Hb_099509_010 Hb_003428_020--Hb_007676_090 Hb_003428_020--Hb_000186_020 Hb_003428_020--Hb_000084_270 Hb_003428_020--Hb_099509_010 Hb_007676_090--Hb_000186_020 Hb_007676_090--Hb_000084_270 Hb_014870_010 Hb_014870_010 Hb_007676_090--Hb_014870_010 Hb_000186_020--Hb_000084_270 Hb_000186_020--Hb_014870_010 Hb_000084_270--Hb_014870_010 Hb_000103_170 Hb_000103_170 Hb_099509_010--Hb_000103_170 Hb_006277_090 Hb_006277_090 Hb_099509_010--Hb_006277_090 Hb_000032_130 Hb_000032_130 Hb_099509_010--Hb_000032_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.21213 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.516049

CAGE analysis