Hb_000084_270

Information

Type -
Description -
Location Contig84: 231208-231782
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22820g
description hypothetical protein
nr
ID XP_006381980.1
description hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GEB8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22820g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_270 0.0 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
2 Hb_000186_020 0.0071808947 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
3 Hb_014870_010 0.0226032087 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
4 Hb_007676_090 0.037351157 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]
5 Hb_003428_020 0.0417414119 - - PREDICTED: uncharacterized protein LOC105140247 [Populus euphratica]
6 Hb_000037_210 0.0443477184 - - -
7 Hb_009083_060 0.0451979962 - - PREDICTED: uncharacterized protein LOC103344557 [Prunus mume]
8 Hb_001935_050 0.0584552874 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
9 Hb_000864_040 0.0773327411 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_002571_110 0.0783660447 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
11 Hb_000189_610 0.0818051555 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
12 Hb_001543_010 0.0830086123 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010904_020 0.0891156573 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
14 Hb_124540_010 0.0914597536 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
15 Hb_099509_010 0.1029799415 - - PREDICTED: vacuolar iron transporter 1-like isoform X2 [Jatropha curcas]
16 Hb_001085_280 0.1206946539 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
17 Hb_000103_170 0.1210457349 - - uncharacterized protein LOC100501254 [Zea mays]
18 Hb_000016_140 0.1220078966 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
19 Hb_007761_040 0.1222068669 - - carbonyl reductase, putative [Ricinus communis]
20 Hb_099335_020 0.1247099519 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]

Gene co-expression network

sample Hb_000084_270 Hb_000084_270 Hb_000186_020 Hb_000186_020 Hb_000084_270--Hb_000186_020 Hb_014870_010 Hb_014870_010 Hb_000084_270--Hb_014870_010 Hb_007676_090 Hb_007676_090 Hb_000084_270--Hb_007676_090 Hb_003428_020 Hb_003428_020 Hb_000084_270--Hb_003428_020 Hb_000037_210 Hb_000037_210 Hb_000084_270--Hb_000037_210 Hb_009083_060 Hb_009083_060 Hb_000084_270--Hb_009083_060 Hb_000186_020--Hb_014870_010 Hb_000186_020--Hb_007676_090 Hb_000186_020--Hb_003428_020 Hb_000186_020--Hb_000037_210 Hb_000186_020--Hb_009083_060 Hb_001935_050 Hb_001935_050 Hb_014870_010--Hb_001935_050 Hb_000864_040 Hb_000864_040 Hb_014870_010--Hb_000864_040 Hb_000189_610 Hb_000189_610 Hb_014870_010--Hb_000189_610 Hb_014870_010--Hb_007676_090 Hb_007676_090--Hb_003428_020 Hb_007676_090--Hb_000037_210 Hb_007676_090--Hb_009083_060 Hb_003428_020--Hb_000037_210 Hb_003428_020--Hb_009083_060 Hb_099509_010 Hb_099509_010 Hb_003428_020--Hb_099509_010 Hb_000037_210--Hb_009083_060 Hb_000037_210--Hb_099509_010 Hb_009083_060--Hb_099509_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.944209 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.50481

CAGE analysis