Hb_000189_610

Information

Type -
Description -
Location Contig189: 532550-533502
Sequence    

Annotation

kegg
ID rcu:RCOM_1428860
description Late embryogenesis abundant protein D-34, putative
nr
ID XP_002512261.1
description Late embryogenesis abundant protein D-34, putative [Ricinus communis]
swissprot
ID P09444
description Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4 SV=1
trembl
ID B9REU2
description Late embryogenesis abundant protein D-34, putative OS=Ricinus communis GN=RCOM_1428860 PE=4 SV=1
Gene Ontology
ID GO:0009860
description late embryogenesis abundant protein d-34-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 005_M12r.ab1: 534149-536766

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_610 0.0 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
2 Hb_001543_010 0.0012064814 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000864_040 0.0044829175 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_010904_020 0.0073301648 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
5 Hb_124540_010 0.0096812176 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
6 Hb_001935_050 0.0233917547 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
7 Hb_099335_020 0.0430636406 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
8 Hb_000032_120 0.0447274406 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
9 Hb_001068_060 0.0449963526 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
10 Hb_000877_010 0.0476324334 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
11 Hb_014870_010 0.0592439314 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
12 Hb_003598_060 0.0748123155 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
13 Hb_000084_270 0.0818051555 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
14 Hb_002056_040 0.084684345 - - arsenical pump-driving atpase, putative [Ricinus communis]
15 Hb_000140_020 0.085151452 - - BnaA02g09930D [Brassica napus]
16 Hb_099335_030 0.0869976153 - - hypothetical protein M569_10107, partial [Genlisea aurea]
17 Hb_000186_020 0.0889655853 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
18 Hb_003020_320 0.099067534 - - -
19 Hb_002571_110 0.1091462334 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
20 Hb_007676_090 0.1190104975 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_610 Hb_000189_610 Hb_001543_010 Hb_001543_010 Hb_000189_610--Hb_001543_010 Hb_000864_040 Hb_000864_040 Hb_000189_610--Hb_000864_040 Hb_010904_020 Hb_010904_020 Hb_000189_610--Hb_010904_020 Hb_124540_010 Hb_124540_010 Hb_000189_610--Hb_124540_010 Hb_001935_050 Hb_001935_050 Hb_000189_610--Hb_001935_050 Hb_099335_020 Hb_099335_020 Hb_000189_610--Hb_099335_020 Hb_001543_010--Hb_000864_040 Hb_001543_010--Hb_010904_020 Hb_001543_010--Hb_124540_010 Hb_001543_010--Hb_001935_050 Hb_001543_010--Hb_099335_020 Hb_000864_040--Hb_010904_020 Hb_000864_040--Hb_124540_010 Hb_000864_040--Hb_001935_050 Hb_000864_040--Hb_099335_020 Hb_010904_020--Hb_124540_010 Hb_010904_020--Hb_001935_050 Hb_010904_020--Hb_099335_020 Hb_124540_010--Hb_001935_050 Hb_124540_010--Hb_099335_020 Hb_014870_010 Hb_014870_010 Hb_001935_050--Hb_014870_010 Hb_000032_120 Hb_000032_120 Hb_099335_020--Hb_000032_120 Hb_001068_060 Hb_001068_060 Hb_099335_020--Hb_001068_060 Hb_000877_010 Hb_000877_010 Hb_099335_020--Hb_000877_010 Hb_003598_060 Hb_003598_060 Hb_099335_020--Hb_003598_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.153765 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.122038

CAGE analysis