Hb_099335_020

Information

Type -
Description -
Location Contig99335: 3291-3564
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_905869
description hypothetical protein
nr
ID XP_002877503.1
description hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
swissprot
ID -
description -
trembl
ID Q41900
description Flavonol O-(3)-glucosyl transferase (Fragment) OS=Arabidopsis thaliana PE=2 SV=1
Gene Ontology
ID GO:0016758
description udp-glycosyltransferase superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64806: 2011-2785 , PASA_asmbl_64807: 2817-3059 , PASA_asmbl_64808: 3402-3687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099335_020 0.0 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
2 Hb_000032_120 0.0016649163 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
3 Hb_001068_060 0.0019340164 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_000877_010 0.0045720559 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
5 Hb_003598_060 0.0317842031 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
6 Hb_124540_010 0.0333873001 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
7 Hb_010904_020 0.0357374306 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
8 Hb_002056_040 0.0416734041 - - arsenical pump-driving atpase, putative [Ricinus communis]
9 Hb_001543_010 0.0418579227 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000140_020 0.0421413957 - - BnaA02g09930D [Brassica napus]
11 Hb_000189_610 0.0430636406 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
12 Hb_099335_030 0.0439911194 - - hypothetical protein M569_10107, partial [Genlisea aurea]
13 Hb_000864_040 0.0475433308 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_003020_320 0.0560868351 - - -
15 Hb_001935_050 0.0664317361 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
16 Hb_061183_010 0.0895034774 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
17 Hb_001946_230 0.0970036943 - - -
18 Hb_000313_160 0.0992107289 - - BnaC02g20570D [Brassica napus]
19 Hb_014870_010 0.1022141895 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
20 Hb_000337_020 0.1055762803 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_099335_020 Hb_099335_020 Hb_000032_120 Hb_000032_120 Hb_099335_020--Hb_000032_120 Hb_001068_060 Hb_001068_060 Hb_099335_020--Hb_001068_060 Hb_000877_010 Hb_000877_010 Hb_099335_020--Hb_000877_010 Hb_003598_060 Hb_003598_060 Hb_099335_020--Hb_003598_060 Hb_124540_010 Hb_124540_010 Hb_099335_020--Hb_124540_010 Hb_010904_020 Hb_010904_020 Hb_099335_020--Hb_010904_020 Hb_000032_120--Hb_001068_060 Hb_000032_120--Hb_000877_010 Hb_000032_120--Hb_003598_060 Hb_000032_120--Hb_124540_010 Hb_000032_120--Hb_010904_020 Hb_001068_060--Hb_000877_010 Hb_001068_060--Hb_003598_060 Hb_001068_060--Hb_124540_010 Hb_001068_060--Hb_010904_020 Hb_000877_010--Hb_003598_060 Hb_002056_040 Hb_002056_040 Hb_000877_010--Hb_002056_040 Hb_000140_020 Hb_000140_020 Hb_000877_010--Hb_000140_020 Hb_003598_060--Hb_002056_040 Hb_003598_060--Hb_000140_020 Hb_099335_030 Hb_099335_030 Hb_003598_060--Hb_099335_030 Hb_003020_320 Hb_003020_320 Hb_003598_060--Hb_003020_320 Hb_124540_010--Hb_010904_020 Hb_001543_010 Hb_001543_010 Hb_124540_010--Hb_001543_010 Hb_000189_610 Hb_000189_610 Hb_124540_010--Hb_000189_610 Hb_000864_040 Hb_000864_040 Hb_124540_010--Hb_000864_040 Hb_001935_050 Hb_001935_050 Hb_124540_010--Hb_001935_050 Hb_010904_020--Hb_001543_010 Hb_010904_020--Hb_000189_610 Hb_010904_020--Hb_000864_040 Hb_010904_020--Hb_001935_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.17427 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.11482

CAGE analysis