Hb_124540_010

Information

Type -
Description -
Location Contig124540: 6152-9459
Sequence    

Annotation

kegg
ID vvi:100244784
description NPF3.2; protein NRT1/ PTR FAMILY 3.1
nr
ID XP_011041386.1
description PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
swissprot
ID Q9SX20
description Protein NRT1/ PTR FAMILY 3.1 OS=Arabidopsis thaliana GN=NPF3.1 PE=2 SV=1
trembl
ID W0B3X1
description Nitrate/nitrite transporter (Fragment) OS=Vitis vinifera GN=NPF3.2 PE=2 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124540_010 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
2 Hb_010904_020 0.0023511118 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
3 Hb_001543_010 0.0084747713 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000189_610 0.0096812176 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
5 Hb_000864_040 0.0141639167 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_001935_050 0.0330702934 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
7 Hb_099335_020 0.0333873001 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
8 Hb_000032_120 0.0350515391 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
9 Hb_001068_060 0.0353205237 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
10 Hb_000877_010 0.0379573425 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
11 Hb_003598_060 0.0651475308 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
12 Hb_014870_010 0.0689107884 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
13 Hb_002056_040 0.0750245197 - - arsenical pump-driving atpase, putative [Ricinus communis]
14 Hb_000140_020 0.0754918774 - - BnaA02g09930D [Brassica napus]
15 Hb_099335_030 0.0773390459 - - hypothetical protein M569_10107, partial [Genlisea aurea]
16 Hb_003020_320 0.0894160963 - - -
17 Hb_000084_270 0.0914597536 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
18 Hb_000186_020 0.0986154676 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
19 Hb_002571_110 0.1160695841 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
20 Hb_061183_010 0.122763375 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]

Gene co-expression network

sample Hb_124540_010 Hb_124540_010 Hb_010904_020 Hb_010904_020 Hb_124540_010--Hb_010904_020 Hb_001543_010 Hb_001543_010 Hb_124540_010--Hb_001543_010 Hb_000189_610 Hb_000189_610 Hb_124540_010--Hb_000189_610 Hb_000864_040 Hb_000864_040 Hb_124540_010--Hb_000864_040 Hb_001935_050 Hb_001935_050 Hb_124540_010--Hb_001935_050 Hb_099335_020 Hb_099335_020 Hb_124540_010--Hb_099335_020 Hb_010904_020--Hb_001543_010 Hb_010904_020--Hb_000189_610 Hb_010904_020--Hb_000864_040 Hb_010904_020--Hb_001935_050 Hb_010904_020--Hb_099335_020 Hb_001543_010--Hb_000189_610 Hb_001543_010--Hb_000864_040 Hb_001543_010--Hb_001935_050 Hb_001543_010--Hb_099335_020 Hb_000189_610--Hb_000864_040 Hb_000189_610--Hb_001935_050 Hb_000189_610--Hb_099335_020 Hb_000864_040--Hb_001935_050 Hb_000864_040--Hb_099335_020 Hb_014870_010 Hb_014870_010 Hb_001935_050--Hb_014870_010 Hb_000032_120 Hb_000032_120 Hb_099335_020--Hb_000032_120 Hb_001068_060 Hb_001068_060 Hb_099335_020--Hb_001068_060 Hb_000877_010 Hb_000877_010 Hb_099335_020--Hb_000877_010 Hb_003598_060 Hb_003598_060 Hb_099335_020--Hb_003598_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.050448 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0419171

CAGE analysis