Hb_000864_040

Information

Type -
Description -
Location Contig864: 81731-81943
Sequence    

Annotation

kegg
ID rcu:RCOM_1154630
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002524945.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q683I9
description Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
trembl
ID B9SG26
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1154630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000864_040 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000189_610 0.0044829175 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
3 Hb_001543_010 0.0056893879 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010904_020 0.0118129443 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
5 Hb_124540_010 0.0141639167 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
6 Hb_001935_050 0.0189095507 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
7 Hb_099335_020 0.0475433308 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
8 Hb_000032_120 0.0492068904 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
9 Hb_001068_060 0.0494757627 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
10 Hb_000877_010 0.0521114429 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
11 Hb_014870_010 0.0547663357 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
12 Hb_000084_270 0.0773327411 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
13 Hb_003598_060 0.0792859496 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
14 Hb_000186_020 0.0844951995 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
15 Hb_002056_040 0.0891554662 - - arsenical pump-driving atpase, putative [Ricinus communis]
16 Hb_000140_020 0.0896224469 - - BnaA02g09930D [Brassica napus]
17 Hb_099335_030 0.0914681045 - - hypothetical protein M569_10107, partial [Genlisea aurea]
18 Hb_003020_320 0.1035344589 - - -
19 Hb_002571_110 0.1060822242 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
20 Hb_007676_090 0.1145507308 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]

Gene co-expression network

sample Hb_000864_040 Hb_000864_040 Hb_000189_610 Hb_000189_610 Hb_000864_040--Hb_000189_610 Hb_001543_010 Hb_001543_010 Hb_000864_040--Hb_001543_010 Hb_010904_020 Hb_010904_020 Hb_000864_040--Hb_010904_020 Hb_124540_010 Hb_124540_010 Hb_000864_040--Hb_124540_010 Hb_001935_050 Hb_001935_050 Hb_000864_040--Hb_001935_050 Hb_099335_020 Hb_099335_020 Hb_000864_040--Hb_099335_020 Hb_000189_610--Hb_001543_010 Hb_000189_610--Hb_010904_020 Hb_000189_610--Hb_124540_010 Hb_000189_610--Hb_001935_050 Hb_000189_610--Hb_099335_020 Hb_001543_010--Hb_010904_020 Hb_001543_010--Hb_124540_010 Hb_001543_010--Hb_001935_050 Hb_001543_010--Hb_099335_020 Hb_010904_020--Hb_124540_010 Hb_010904_020--Hb_001935_050 Hb_010904_020--Hb_099335_020 Hb_124540_010--Hb_001935_050 Hb_124540_010--Hb_099335_020 Hb_014870_010 Hb_014870_010 Hb_001935_050--Hb_014870_010 Hb_000032_120 Hb_000032_120 Hb_099335_020--Hb_000032_120 Hb_001068_060 Hb_001068_060 Hb_099335_020--Hb_001068_060 Hb_000877_010 Hb_000877_010 Hb_099335_020--Hb_000877_010 Hb_003598_060 Hb_003598_060 Hb_099335_020--Hb_003598_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.36095 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.05741

CAGE analysis