Hb_000877_010

Information

Type -
Description -
Location Contig877: 49127-55699
Sequence    

Annotation

kegg
ID rcu:RCOM_0549160
description hypothetical protein
nr
ID XP_012080714.1
description PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
swissprot
ID Q9LIR8
description F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1
trembl
ID A0A067K771
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13801 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000877_010 0.0 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
2 Hb_001068_060 0.0026380476 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
3 Hb_000032_120 0.0029071473 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
4 Hb_099335_020 0.0045720559 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
5 Hb_003598_060 0.0272135184 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
6 Hb_002056_040 0.0371038008 - - arsenical pump-driving atpase, putative [Ricinus communis]
7 Hb_000140_020 0.0375718514 - - BnaA02g09930D [Brassica napus]
8 Hb_124540_010 0.0379573425 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
9 Hb_099335_030 0.0394218148 - - hypothetical protein M569_10107, partial [Genlisea aurea]
10 Hb_010904_020 0.0403071972 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
11 Hb_001543_010 0.0464268877 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000189_610 0.0476324334 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
13 Hb_003020_320 0.0515193685 - - -
14 Hb_000864_040 0.0521114429 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_001935_050 0.0709962595 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
16 Hb_061183_010 0.0849435572 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
17 Hb_001946_230 0.0924459741 - - -
18 Hb_000313_160 0.0946536922 - - BnaC02g20570D [Brassica napus]
19 Hb_000337_020 0.1010213067 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
20 Hb_001281_030 0.1028918629 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]

Gene co-expression network

sample Hb_000877_010 Hb_000877_010 Hb_001068_060 Hb_001068_060 Hb_000877_010--Hb_001068_060 Hb_000032_120 Hb_000032_120 Hb_000877_010--Hb_000032_120 Hb_099335_020 Hb_099335_020 Hb_000877_010--Hb_099335_020 Hb_003598_060 Hb_003598_060 Hb_000877_010--Hb_003598_060 Hb_002056_040 Hb_002056_040 Hb_000877_010--Hb_002056_040 Hb_000140_020 Hb_000140_020 Hb_000877_010--Hb_000140_020 Hb_001068_060--Hb_000032_120 Hb_001068_060--Hb_099335_020 Hb_001068_060--Hb_003598_060 Hb_124540_010 Hb_124540_010 Hb_001068_060--Hb_124540_010 Hb_010904_020 Hb_010904_020 Hb_001068_060--Hb_010904_020 Hb_000032_120--Hb_099335_020 Hb_000032_120--Hb_003598_060 Hb_000032_120--Hb_124540_010 Hb_000032_120--Hb_010904_020 Hb_099335_020--Hb_003598_060 Hb_099335_020--Hb_124540_010 Hb_099335_020--Hb_010904_020 Hb_003598_060--Hb_002056_040 Hb_003598_060--Hb_000140_020 Hb_099335_030 Hb_099335_030 Hb_003598_060--Hb_099335_030 Hb_003020_320 Hb_003020_320 Hb_003598_060--Hb_003020_320 Hb_002056_040--Hb_000140_020 Hb_002056_040--Hb_099335_030 Hb_002056_040--Hb_003020_320 Hb_002056_040--Hb_001068_060 Hb_000140_020--Hb_099335_030 Hb_000140_020--Hb_003020_320 Hb_000140_020--Hb_001068_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0861682 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0856365

CAGE analysis